BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.3 nTPM
HPA Brain:120.7 nTPM
GTEx:60.3 nTPM
FANTOM5:281.4 Scaled Tags Per Million
Macaque:67.2 nTPM
Mouse:100.1 nTPM
Rat:196.7 nTPM
Pig:106.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.6
2411 Female, age 72, unknown 125.6
2019 Male, age 18, unknown 124.5
1870 Female, age 42, unknown 112.5
1827 Male, age 72, unknown 110.5
2666 Male, age 74, left hemisphere 103.6
2586 Male, age 75, left hemisphere 103.0
2828 Female, age 72, unknown 98.0
1833 Male, age 53, unknown 94.7
1830 Male, age 51, unknown 89.3
2219 Male, age 76, both hemispheres 84.4
Dorsal raphe nucleus
nTPM: 119.6
2298 Female, age 72, unknown 151.5
2047 Male, age 72, unknown 121.3
1828 Male, age 53, unknown 111.2
2750 Male, age 76, both hemispheres 107.0
2016 Female, age 72, unknown 106.7
Inferior colliculus
nTPM: 105.4
2097 Female, age 72, unknown 129.5
1890 Male, age 53, unknown 108.3
1848 Female, age 42, unknown 102.8
2849 Male, age 72, unknown 81.0
Median raphe nucleus
nTPM: 110.4
2220 Male, age 76, midline 110.4
Periaquaductal grey, anterior
nTPM: 118.0
1947 Male, age 18, unknown 125.5
2502 Female, age 75, unknown 124.8
1795 Male, age 51, unknown 103.8
Periaquaductal grey, dorsal
nTPM: 95.7
1840 Male, age 53, unknown 104.8
2464 Female, age 72, unknown 100.6
1831 Male, age 72, unknown 95.3
2850 Male, age 76, both hemispheres 82.0
Periaquaductal grey, lateral
nTPM: 93.2
2272 Male, age 74, both hemispheres 102.8
2053 Male, age 18, unknown 99.6
2140 Male, age 76, both hemispheres 77.1
Pretectal area
nTPM: 115.3
2007 Male, age 72, unknown 142.3
1817 Female, age 42, unknown 131.0
1816 Male, age 51, unknown 129.6
1944 Female, age 72, unknown 128.3
2224 Female, age 72, unknown 122.4
1815 Male, age 53, unknown 121.9
2273 Male, age 74, both hemispheres 109.9
2667 Female, age 75, unknown 105.8
2407 Male, age 75, both hemispheres 97.7
2825 Male, age 18, unknown 94.5
2316 Male, age 76, right hemisphere 84.9
Red nucleus
nTPM: 107.3
1821 Female, age 72, unknown 141.5
2503 Female, age 72, unknown 115.5
1865 Male, age 51, unknown 114.5
2785 Male, age 18, unknown 110.4
1954 Female, age 42, unknown 108.6
1904 Male, age 53, unknown 108.0
2227 Male, age 72, unknown 106.5
2769 Male, age 72, unknown 106.5
2725 Female, age 75, unknown 100.6
2584 Male, age 75, left hemisphere 97.4
2588 Male, age 74, left hemisphere 88.9
2823 Male, age 76, right hemisphere 88.7
Substantia nigra
nTPM: 120.7
1916 Female, age 42, unknown 144.3
1851 Male, age 51, unknown 138.2
2409 Female, age 72, unknown 135.6
1889 Female, age 72, unknown 135.0
2241 Male, age 72, unknown 127.7
1941 Male, age 53, unknown 122.2
2583 Male, age 75, right hemisphere 112.0
2590 Female, age 75, unknown 103.0
2665 Male, age 74, both hemispheres 97.9
2699 Male, age 18, unknown 91.1
Superior colliculus
nTPM: 105.5
2668 Female, age 75, unknown 130.7
2261 Male, age 18, unknown 116.0
2587 Male, age 74, left hemisphere 111.0
2087 Female, age 72, unknown 107.4
1913 Female, age 42, unknown 106.2
1796 Male, age 53, unknown 103.6
1839 Male, age 51, unknown 98.5
1895 Male, age 76, right hemisphere 98.5
1995 Male, age 72, unknown 92.5
2664 Male, age 75, both hemispheres 91.1
Ventral tegmental area
nTPM: 111.3
2410 Female, age 72, unknown 139.0
1915 Female, age 42, unknown 110.1
1942 Male, age 51, unknown 109.6
2223 Female, age 72, unknown 104.1
2021 Male, age 53, unknown 102.8
2218 Male, age 76, both hemispheres 102.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 60.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.3
Samples: 183

Max nTPM: 99.8
Min nTPM: 32.3
Std nTPM: 11.6
Median nTPM: 58.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 99.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 96.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 94.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 88.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 83.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 79.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 79.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 79.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 78.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 281.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 281.4
FF:10158-103A5 76 years, female 281.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 67.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 67.2
Samples: 1

Max nTPM: 67.2
Min nTPM: 67.2
Sample A 67.2
Midbrain
nTPM: 57.8
Samples: 1

Max nTPM: 57.8
Min nTPM: 57.8
Sample A 57.8
Superior colliculi
nTPM: 66.2
Samples: 1

Max nTPM: 66.2
Min nTPM: 66.2
Sample A 66.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 106.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.7
Samples: 3

Max nTPM: 106.7
Min nTPM: 77.4
Sample A Female 106.7
Sample B Female 77.4
Sample C Male 102.9
Midbrain
nTPM: 106.4
Samples: 3

Max nTPM: 133.2
Min nTPM: 83.9
Sample B Female 83.9
Sample C Male 133.2
Sample D Male 102.2
Periaqueductal gray
nTPM: 74.6
Samples: 3

Max nTPM: 83.3
Min nTPM: 68.7
Sample B Female 71.7
Sample C Male 83.3
Sample D Male 68.7
Superior colliculi
nTPM: 99.8
Samples: 4

Max nTPM: 128.4
Min nTPM: 75.9
Sample A Female 103.5
Sample B Female 75.9
Sample C Male 128.4
Sample D Male 91.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.1
Samples: 4

Max nTPM: 107.8
Min nTPM: 90.4
Sample A 99.3
Sample B 90.4
Sample C 102.7
Sample D 107.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 196.7
Rat sample Sample description nTPM
Midbrain
nTPM: 196.7
Samples: 4

Max nTPM: 202.0
Min nTPM: 190.5
Sample A 190.5
Sample A 200.2
Sample A 202.0
Sample A 194.1

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