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RNF130
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  • RNF130
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:167.8 nTPM
HPA Brain:110.3 nTPM
GTEx:167.8 nTPM
FANTOM5:178.6 Scaled Tags Per Million
Pig:183.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 93.8
1981 Female, age 72, midline 129.2
2048 Male, age 55, midline 105.4
2816 Male, age 47, midline 82.2
2194 Female, age 79, both hemispheres 81.0
2565 Male, age 75, midline 71.3
Cervical spinal cord, dorsal horn
nTPM: 110.3
2296 Male, age 66, both hemispheres 167.9
2173 Female, age 72, unknown 154.9
2069 Male, age 47, both hemispheres 127.7
1877 Male, age 55, unknown 88.8
2721 Male, age 90, both hemispheres 61.8
2297 Male, age 75, both hemispheres 60.9
Cervical spinal cord, ventral horn
nTPM: 105.0
2098 Female, age 72, unknown 135.3
2068 Male, age 55, unknown 110.5
2809 Male, age 90, both hemispheres 105.6
2480 Male, age 75, both hemispheres 104.7
2295 Male, age 66, both hemispheres 91.0
2820 Female, age 79, both hemispheres 83.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 167.8
Samples: 204

Max nTPM: 271.5
Min nTPM: 58.0
Std nTPM: 46.1
Median nTPM: 170.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 271.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 263.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 262.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 261.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 258.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 254.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 254.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 252.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 248.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 242.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 241.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 236.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 235.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 231.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 229.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 225.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 223.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 223.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 222.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 221.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 220.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 220.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 219.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 219.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 218.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 218.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 217.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 217.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 216.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 215.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 215.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 215.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 213.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 212.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 211.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 210.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 210.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 208.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 208.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 207.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 206.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 206.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 205.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 205.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 205.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 204.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 204.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 203.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 202.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 202.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 200.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 200.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 200.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 198.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 197.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 197.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 196.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 196.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 196.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 196.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 195.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 194.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 194.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 193.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 190.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 190.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 189.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 189.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 188.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 188.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 188.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 187.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 187.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 187.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 187.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 186.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 185.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 184.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 183.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 183.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 181.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 180.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 180.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 179.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 179.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 179.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 178.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 178.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 177.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 177.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 177.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 176.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 176.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 176.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 175.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 175.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 173.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 172.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 172.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 171.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 171.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 170.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 170.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 169.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 169.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 169.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 168.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 168.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 168.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 167.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 167.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 166.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 166.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 165.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 165.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 164.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 164.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 163.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 160.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 160.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 160.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 158.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 158.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 158.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 158.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 157.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 157.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 157.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 155.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 154.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 154.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 153.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 153.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 152.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 151.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 149.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 148.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 148.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 147.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 146.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 144.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 144.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 144.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 142.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 141.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 141.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 141.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 139.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 139.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 138.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 137.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 135.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 133.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 132.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 130.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 130.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 129.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 129.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 129.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 128.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 127.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 124.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 123.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 122.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 121.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 118.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 118.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 118.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 115.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 115.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 110.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 110.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 107.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 103.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 103.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 102.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 99.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 98.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 96.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 96.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 96.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 91.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 88.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 81.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 77.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 77.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 72.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 70.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 68.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 62.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 60.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 58.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 58.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

178.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 178.6
FF:10159-103A6 76 years, female 185.7
FF:10181-103D1 60 years, female 171.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 183.9
Samples: 4

Max nTPM: 201.5
Min nTPM: 161.1
Sample A Female 161.1
Sample B Female 199.3
Sample C Male 201.5
Sample D Male 173.5
Ventral spinal cord
nTPM: 175.4
Samples: 4

Max nTPM: 186.6
Min nTPM: 162.9
Sample A Female 178.5
Sample B Female 186.6
Sample C Male 162.9
Sample D Male 173.4

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