MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.6 nTPM
HPA Brain:101.8 nTPM
GTEx:98.6 nTPM
FANTOM5:277.3 Scaled Tags Per Million
Pig:169.1 nTPM
Mouse:88.8 nTPM
Allen mouse:8.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.2
2411 Female, age 72, unknown 113.9
1830 Male, age 51, unknown 104.4
1870 Female, age 42, unknown 102.6
2019 Male, age 18, unknown 102.0
1833 Male, age 53, unknown 100.0
2828 Female, age 72, unknown 73.9
2219 Male, age 76, both hemispheres 73.8
2586 Male, age 75, left hemisphere 67.9
1827 Male, age 72, unknown 64.0
2666 Male, age 74, left hemisphere 59.7
Dorsal raphe nucleus
nTPM: 83.9
2750 Male, age 76, both hemispheres 116.9
2016 Female, age 72, unknown 80.5
2298 Female, age 72, unknown 78.8
1828 Male, age 53, unknown 76.0
2047 Male, age 72, unknown 67.1
Inferior colliculus
nTPM: 71.7
1848 Female, age 42, unknown 75.6
2097 Female, age 72, unknown 72.4
2849 Male, age 72, unknown 70.5
1890 Male, age 53, unknown 68.3
Median raphe nucleus
nTPM: 77.4
2220 Male, age 76, midline 77.4
Periaquaductal grey, anterior
nTPM: 58.2
2502 Female, age 75, unknown 66.5
1947 Male, age 18, unknown 54.9
1795 Male, age 51, unknown 53.2
Periaquaductal grey, dorsal
nTPM: 62.9
2464 Female, age 72, unknown 78.7
1831 Male, age 72, unknown 60.6
1840 Male, age 53, unknown 57.4
2850 Male, age 76, both hemispheres 55.0
Periaquaductal grey, lateral
nTPM: 66.3
2272 Male, age 74, both hemispheres 74.0
2053 Male, age 18, unknown 70.1
2140 Male, age 76, both hemispheres 54.9
Pretectal area
nTPM: 66.9
2316 Male, age 76, right hemisphere 83.1
1815 Male, age 53, unknown 75.6
2825 Male, age 18, unknown 74.1
2273 Male, age 74, both hemispheres 73.6
1817 Female, age 42, unknown 71.5
2224 Female, age 72, unknown 71.5
2007 Male, age 72, unknown 66.2
2407 Male, age 75, both hemispheres 66.0
2667 Female, age 75, unknown 57.8
1816 Male, age 51, unknown 48.5
1944 Female, age 72, unknown 47.6
Red nucleus
nTPM: 101.8
1865 Male, age 51, unknown 127.6
1904 Male, age 53, unknown 123.8
1821 Female, age 72, unknown 115.9
2227 Male, age 72, unknown 110.3
2769 Male, age 72, unknown 110.0
2823 Male, age 76, right hemisphere 107.7
2503 Female, age 72, unknown 106.2
1954 Female, age 42, unknown 104.1
2785 Male, age 18, unknown 104.1
2725 Female, age 75, unknown 74.2
2588 Male, age 74, left hemisphere 70.6
2584 Male, age 75, left hemisphere 66.9
Substantia nigra
nTPM: 75.4
2590 Female, age 75, unknown 87.9
2409 Female, age 72, unknown 83.8
2241 Male, age 72, unknown 81.9
2583 Male, age 75, right hemisphere 81.1
1851 Male, age 51, unknown 79.7
2665 Male, age 74, both hemispheres 70.2
1889 Female, age 72, unknown 68.8
1941 Male, age 53, unknown 68.8
2699 Male, age 18, unknown 68.4
1916 Female, age 42, unknown 63.1
Superior colliculus
nTPM: 79.4
1913 Female, age 42, unknown 111.0
1995 Male, age 72, unknown 97.3
2587 Male, age 74, left hemisphere 90.2
2668 Female, age 75, unknown 88.2
1895 Male, age 76, right hemisphere 82.7
1839 Male, age 51, unknown 81.5
1796 Male, age 53, unknown 65.0
2087 Female, age 72, unknown 61.8
2261 Male, age 18, unknown 59.0
2664 Male, age 75, both hemispheres 56.9
Ventral tegmental area
nTPM: 80.1
2223 Female, age 72, unknown 109.0
2410 Female, age 72, unknown 96.7
2021 Male, age 53, unknown 74.3
1915 Female, age 42, unknown 68.2
2218 Male, age 76, both hemispheres 67.3
1942 Male, age 51, unknown 65.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.6
Samples: 183

Max nTPM: 237.2
Min nTPM: 17.6
Std nTPM: 41.6
Median nTPM: 91.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 237.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 235.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 217.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 201.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 193.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 183.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 179.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 176.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 175.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 173.9
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 171.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 277.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 277.3
FF:10158-103A5 76 years, female 277.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 169.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 157.1
Samples: 4

Max nTPM: 186.2
Min nTPM: 121.3
Sample A Female 184.8
Sample B Female 136.2
Sample C Male 121.3
Sample D Male 186.2
Midbrain
nTPM: 169.1
Samples: 4

Max nTPM: 250.8
Min nTPM: 115.1
Sample A Female 250.8
Sample B Female 164.9
Sample C Male 145.7
Sample D Male 115.1
Periaqueductal gray
nTPM: 132.1
Samples: 3

Max nTPM: 144.6
Min nTPM: 119.1
Sample B Female 144.6
Sample C Male 119.1
Sample D Male 132.6
Superior colliculi
nTPM: 154.9
Samples: 4

Max nTPM: 185.6
Min nTPM: 128.0
Sample A Female 185.6
Sample B Female 128.0
Sample C Male 149.8
Sample D Male 156.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 88.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 92.0
Min nTPM: 84.6
Sample A Male 84.6
Sample B Male 90.2
Sample C Female 92.0
Sample D Female 88.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
68637868 Antisense, RP_050126_01_G07, Mouse strain C57BL/6J (56 days, male) 8.0

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