BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:282.0 nTPM
HPA Brain:285.0 nTPM
GTEx:282.0 nTPM
FANTOM5:577.0 Scaled Tags Per Million
Macaque:93.0 nTPM
Mouse:94.6 nTPM
Rat:21.3 nTPM
Pig:81.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 285.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 242.7
2828 Female, age 72, unknown 285.8
1870 Female, age 42, unknown 276.3
1830 Male, age 51, unknown 268.0
2586 Male, age 75, left hemisphere 267.1
2666 Male, age 74, left hemisphere 260.3
1833 Male, age 53, unknown 253.2
2411 Female, age 72, unknown 232.3
2019 Male, age 18, unknown 223.8
1827 Male, age 72, unknown 193.4
2219 Male, age 76, both hemispheres 166.9
Dorsal raphe nucleus
nTPM: 222.4
2016 Female, age 72, unknown 284.6
1828 Male, age 53, unknown 243.0
2750 Male, age 76, both hemispheres 222.1
2047 Male, age 72, unknown 211.8
2298 Female, age 72, unknown 150.4
Inferior colliculus
nTPM: 190.9
1848 Female, age 42, unknown 210.6
2849 Male, age 72, unknown 200.1
1890 Male, age 53, unknown 199.4
2097 Female, age 72, unknown 153.4
Median raphe nucleus
nTPM: 198.4
2220 Male, age 76, midline 198.4
Periaquaductal grey, anterior
nTPM: 179.6
2502 Female, age 75, unknown 187.4
1947 Male, age 18, unknown 177.7
1795 Male, age 51, unknown 173.8
Periaquaductal grey, dorsal
nTPM: 196.6
2850 Male, age 76, both hemispheres 209.8
2464 Female, age 72, unknown 205.4
1831 Male, age 72, unknown 204.2
1840 Male, age 53, unknown 166.7
Periaquaductal grey, lateral
nTPM: 193.1
2053 Male, age 18, unknown 222.5
2140 Male, age 76, both hemispheres 202.8
2272 Male, age 74, both hemispheres 154.1
Pretectal area
nTPM: 179.9
1815 Male, age 53, unknown 226.2
2316 Male, age 76, right hemisphere 221.5
2407 Male, age 75, both hemispheres 219.6
2825 Male, age 18, unknown 205.0
1817 Female, age 42, unknown 193.5
2224 Female, age 72, unknown 169.9
2273 Male, age 74, both hemispheres 157.9
2007 Male, age 72, unknown 156.3
1944 Female, age 72, unknown 152.5
2667 Female, age 75, unknown 144.3
1816 Male, age 51, unknown 132.3
Red nucleus
nTPM: 285.0
1865 Male, age 51, unknown 330.0
1904 Male, age 53, unknown 312.4
1954 Female, age 42, unknown 308.1
2503 Female, age 72, unknown 303.6
2588 Male, age 74, left hemisphere 298.3
2823 Male, age 76, right hemisphere 292.0
2227 Male, age 72, unknown 284.7
2769 Male, age 72, unknown 282.8
1821 Female, age 72, unknown 273.8
2725 Female, age 75, unknown 256.9
2785 Male, age 18, unknown 247.8
2584 Male, age 75, left hemisphere 229.5
Substantia nigra
nTPM: 221.2
2699 Male, age 18, unknown 272.7
2409 Female, age 72, unknown 244.6
2590 Female, age 75, unknown 244.3
2583 Male, age 75, right hemisphere 238.9
1851 Male, age 51, unknown 236.6
2665 Male, age 74, both hemispheres 232.0
2241 Male, age 72, unknown 200.0
1889 Female, age 72, unknown 193.9
1941 Male, age 53, unknown 177.0
1916 Female, age 42, unknown 172.4
Superior colliculus
nTPM: 224.5
1995 Male, age 72, unknown 313.8
1913 Female, age 42, unknown 312.6
2668 Female, age 75, unknown 254.6
2587 Male, age 74, left hemisphere 227.7
1839 Male, age 51, unknown 213.7
2664 Male, age 75, both hemispheres 209.0
1895 Male, age 76, right hemisphere 192.8
2087 Female, age 72, unknown 184.3
1796 Male, age 53, unknown 175.6
2261 Male, age 18, unknown 161.4
Ventral tegmental area
nTPM: 216.5
2223 Female, age 72, unknown 227.9
2410 Female, age 72, unknown 227.0
2021 Male, age 53, unknown 224.0
1942 Male, age 51, unknown 217.6
1915 Female, age 42, unknown 217.0
2218 Male, age 76, both hemispheres 185.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 282.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 282.0
Samples: 183

Max nTPM: 798.5
Min nTPM: 37.2
Std nTPM: 140.0
Median nTPM: 246.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 798.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 692.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 681.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 655.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 604.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 593.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 585.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 578.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 562.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 556.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 552.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 577.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 577.0
FF:10158-103A5 76 years, female 577.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 93.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 93.0
Samples: 1

Max nTPM: 93.0
Min nTPM: 93.0
Sample A 93.0
Midbrain
nTPM: 85.7
Samples: 1

Max nTPM: 85.7
Min nTPM: 85.7
Sample A 85.7
Superior colliculi
nTPM: 52.9
Samples: 1

Max nTPM: 52.9
Min nTPM: 52.9
Sample A 52.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.7
Samples: 3

Max nTPM: 84.0
Min nTPM: 60.3
Sample A Female 84.0
Sample B Female 60.3
Sample C Male 67.8
Midbrain
nTPM: 63.2
Samples: 3

Max nTPM: 81.7
Min nTPM: 46.2
Sample B Female 61.6
Sample C Male 81.7
Sample D Male 46.2
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 61.1
Min nTPM: 37.5
Sample B Female 60.2
Sample C Male 61.1
Sample D Male 37.5
Superior colliculi
nTPM: 81.3
Samples: 4

Max nTPM: 127.1
Min nTPM: 58.3
Sample A Female 78.0
Sample B Female 61.8
Sample C Male 127.1
Sample D Male 58.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.6
Samples: 4

Max nTPM: 102.2
Min nTPM: 91.1
Sample A 91.1
Sample B 102.2
Sample C 92.8
Sample D 92.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 21.3
Rat sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 20.4
Sample A 20.9
Sample A 20.4
Sample A 23.2
Sample A 20.7

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