MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1164.1 nTPM
HPA Brain:312.5 nTPM
GTEx:1164.1 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:447.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 312.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 282.1
1870 Female, age 42, unknown 312.6
2666 Male, age 74, left hemisphere 305.8
1827 Male, age 72, unknown 302.4
2411 Female, age 72, unknown 302.3
2828 Female, age 72, unknown 282.9
1833 Male, age 53, unknown 276.9
2019 Male, age 18, unknown 267.4
1830 Male, age 51, unknown 264.3
2586 Male, age 75, left hemisphere 262.5
2219 Male, age 76, both hemispheres 243.4
Dorsal raphe nucleus
nTPM: 286.2
2298 Female, age 72, unknown 318.8
2750 Male, age 76, both hemispheres 284.4
1828 Male, age 53, unknown 283.1
2016 Female, age 72, unknown 281.5
2047 Male, age 72, unknown 263.1
Inferior colliculus
nTPM: 302.4
2849 Male, age 72, unknown 322.7
1890 Male, age 53, unknown 310.8
2097 Female, age 72, unknown 293.6
1848 Female, age 42, unknown 282.3
Median raphe nucleus
nTPM: 278.5
2220 Male, age 76, midline 278.5
Periaquaductal grey, anterior
nTPM: 284.3
2502 Female, age 75, unknown 323.7
1795 Male, age 51, unknown 265.8
1947 Male, age 18, unknown 263.3
Periaquaductal grey, dorsal
nTPM: 285.6
1840 Male, age 53, unknown 334.1
2850 Male, age 76, both hemispheres 282.3
1831 Male, age 72, unknown 281.8
2464 Female, age 72, unknown 244.5
Periaquaductal grey, lateral
nTPM: 257.0
2053 Male, age 18, unknown 301.7
2140 Male, age 76, both hemispheres 256.8
2272 Male, age 74, both hemispheres 212.7
Pretectal area
nTPM: 272.8
2224 Female, age 72, unknown 286.3
1817 Female, age 42, unknown 286.1
1815 Male, age 53, unknown 284.5
2825 Male, age 18, unknown 280.7
1816 Male, age 51, unknown 278.3
2007 Male, age 72, unknown 277.8
2316 Male, age 76, right hemisphere 274.9
1944 Female, age 72, unknown 273.4
2407 Male, age 75, both hemispheres 270.9
2667 Female, age 75, unknown 258.7
2273 Male, age 74, both hemispheres 229.4
Red nucleus
nTPM: 289.9
2725 Female, age 75, unknown 335.0
1821 Female, age 72, unknown 333.3
2503 Female, age 72, unknown 317.9
2584 Male, age 75, left hemisphere 312.4
1865 Male, age 51, unknown 300.4
2769 Male, age 72, unknown 286.7
2588 Male, age 74, left hemisphere 281.4
1904 Male, age 53, unknown 273.7
2227 Male, age 72, unknown 266.0
1954 Female, age 42, unknown 260.5
2785 Male, age 18, unknown 257.8
2823 Male, age 76, right hemisphere 253.5
Substantia nigra
nTPM: 312.5
2665 Male, age 74, both hemispheres 371.7
2699 Male, age 18, unknown 355.4
2409 Female, age 72, unknown 348.1
1851 Male, age 51, unknown 345.7
2241 Male, age 72, unknown 321.5
1916 Female, age 42, unknown 313.6
1889 Female, age 72, unknown 309.8
1941 Male, age 53, unknown 274.5
2590 Female, age 75, unknown 244.9
2583 Male, age 75, right hemisphere 239.5
Superior colliculus
nTPM: 288.2
2587 Male, age 74, left hemisphere 370.1
1895 Male, age 76, right hemisphere 303.4
1913 Female, age 42, unknown 291.5
1839 Male, age 51, unknown 290.6
2668 Female, age 75, unknown 286.8
1796 Male, age 53, unknown 282.3
1995 Male, age 72, unknown 280.8
2664 Male, age 75, both hemispheres 267.1
2261 Male, age 18, unknown 258.3
2087 Female, age 72, unknown 250.9
Ventral tegmental area
nTPM: 285.4
1915 Female, age 42, unknown 340.6
2223 Female, age 72, unknown 286.6
2410 Female, age 72, unknown 280.6
2021 Male, age 53, unknown 277.6
1942 Male, age 51, unknown 267.0
2218 Male, age 76, both hemispheres 260.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1164.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1164.1
Samples: 183

Max nTPM: 2716.0
Min nTPM: 482.6
Std nTPM: 416.8
Median nTPM: 1085.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2716.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2693.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2475.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2386.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2370.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2349.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2245.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2104.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2051.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1984.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1961.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 447.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 422.8
Samples: 4

Max nTPM: 547.1
Min nTPM: 343.2
Sample A Female 547.1
Sample B Female 434.7
Sample C Male 366.3
Sample D Male 343.2
Midbrain
nTPM: 429.1
Samples: 4

Max nTPM: 543.8
Min nTPM: 346.6
Sample A Female 543.8
Sample B Female 471.2
Sample C Male 346.6
Sample D Male 354.8
Periaqueductal gray
nTPM: 344.2
Samples: 3

Max nTPM: 362.6
Min nTPM: 333.5
Sample B Female 362.6
Sample C Male 336.4
Sample D Male 333.5
Superior colliculi
nTPM: 447.5
Samples: 4

Max nTPM: 500.6
Min nTPM: 391.5
Sample A Female 500.6
Sample B Female 460.2
Sample C Male 437.5
Sample D Male 391.5

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