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  • TISSUE

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  • RPL24
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:925.1 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:275.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051653
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

925.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 925.1
Samples: 300

Max nTPM: 2462.5
Min nTPM: 498.5
Std nTPM: 283.8
Median nTPM: 871.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2462.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2076.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1975.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1945.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1903.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1889.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1788.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1706.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1658.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1629.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1571.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1569.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1524.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1456.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1448.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1411.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1408.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1374.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1362.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1323.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1322.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1320.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1304.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1299.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1285.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1269.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1263.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1251.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1249.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1243.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1243.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1240.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1235.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1228.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1228.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1227.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1223.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1217.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1209.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1201.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1195.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1193.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1169.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1164.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1164.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1160.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1157.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1156.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1155.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1155.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1153.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1152.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1149.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1147.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1146.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1143.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1138.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1125.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1120.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1116.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1111.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1108.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1100.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1092.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1089.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1085.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1080.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1074.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1073.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1070.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1070.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1067.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1067.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1056.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1049.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1047.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1044.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1032.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1029.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1026.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1026.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1024.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1022.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1021.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1017.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1016.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1016.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1014.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1004.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1001.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1000.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 998.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 995.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 993.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 992.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 990.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 988.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 984.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 983.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 981.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 978.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 976.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 973.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 970.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 969.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 964.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 961.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 955.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 954.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 950.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 946.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 944.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 941.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 939.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 938.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 934.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 933.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 933.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 930.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 927.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 926.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 923.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 922.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 916.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 907.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 906.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 903.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 903.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 902.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 900.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 899.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 899.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 898.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 898.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 897.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 892.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 889.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 889.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 888.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 883.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 883.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 883.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 883.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 881.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 880.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 879.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 877.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 875.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 875.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 871.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 870.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 869.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 869.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 859.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 859.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 857.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 857.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 856.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 856.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 855.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 855.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 852.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 851.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 850.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 846.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 844.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 844.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 843.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 839.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 836.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 831.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 831.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 831.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 829.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 829.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 829.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 827.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 826.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 826.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 823.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 823.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 820.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 819.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 816.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 814.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 809.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 809.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 808.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 807.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 805.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 804.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 802.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 800.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 796.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 794.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 793.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 791.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 789.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 789.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 788.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 788.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 782.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 778.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 774.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 770.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 765.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 765.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 763.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 763.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 763.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 763.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 762.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 761.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 759.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 757.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 757.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 757.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 754.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 754.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 752.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 752.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 746.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 739.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 738.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 737.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 728.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 727.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 725.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 725.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 725.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 721.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 716.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 713.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 711.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 707.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 704.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 702.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 700.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 697.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 697.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 696.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 695.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 695.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 693.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 692.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 689.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 686.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 682.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 677.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 675.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 673.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 671.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 670.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 670.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 668.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 667.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 665.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 665.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 660.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 658.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 658.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 656.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 655.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 653.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 643.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 642.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 639.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 638.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 637.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 636.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 636.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 635.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 632.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 632.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 630.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 628.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 627.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 626.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 621.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 616.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 616.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 610.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 605.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 598.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 593.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 587.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 578.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 577.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 563.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 554.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 553.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 541.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 534.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 531.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 528.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 521.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 519.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 516.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 515.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 498.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.2
FF:10164-103B2 76 years, female 114.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.9
Pig sample Sample description nTPM
Caudate
nTPM: 275.9
Samples: 4

Max nTPM: 285.2
Min nTPM: 260.0
Sample A Female 274.8
Sample B Female 285.2
Sample C Male 283.6
Sample D Male 260.0

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