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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:977.5 nTPM
HPA:742.4 nTPM
GTEx:977.5 nTPM
FANTOM5:100.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051653
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

742.4
overview
Male, age 65
Small intestine sample 232
nTPM: 925.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 719.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 644.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 680

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

977.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 977.5
Samples: 207

Max nTPM: 2028.8
Min nTPM: 522.9
Std nTPM: 282.6
Median nTPM: 922.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2028.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2012.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1915.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1858.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1856.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1812.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1784.9
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1699.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1596.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1576.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1551.5
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1511.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1463.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1462.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1442.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1382.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1362.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1342.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1340.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1340.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1338.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1327.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1322.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1322.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1305.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1293.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1277.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1270.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1253.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1252.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1243.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1242.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1223.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1214.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1191.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1191.5
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1176.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1173.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1166.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1162.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1157.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1152.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1149.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1146.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1133.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1130.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1116.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1108.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1106.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 1104.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1102.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1097.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1084.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1082.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1081.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1071.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1070.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1068.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1067.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1064.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1059.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1058.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1056.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1046.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1042.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1040.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1036.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1031.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1028.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1021.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1021.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1017.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1007.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1007.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1006.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1003.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 996.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 995.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 995.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 990.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 990.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 988.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 981.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 979.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 978.0
GTEX-178AV-1226-SM-GOR11 40-49 years, male 977.9
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 977.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 969.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 964.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 958.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 958.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 958.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 956.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 954.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 953.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 952.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 945.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 944.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 932.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 932.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 930.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 929.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 926.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 922.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 920.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 920.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 917.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 914.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 914.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 912.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 912.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 910.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 908.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 903.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 903.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 902.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 900.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 894.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 881.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 879.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 874.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 871.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 871.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 869.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 868.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 866.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 865.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 863.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 859.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 852.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 850.5
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 848.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 846.4
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 846.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 843.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 841.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 841.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 837.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 836.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 836.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 832.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 826.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 822.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 822.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 817.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 816.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 809.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 804.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 804.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 793.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 791.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 790.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 788.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 786.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 786.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 784.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 781.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 779.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 777.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 776.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 773.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 772.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 769.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 764.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 757.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 756.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 754.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 751.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 738.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 736.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 733.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 733.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 728.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 725.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 719.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 718.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 718.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 713.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 710.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 709.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 704.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 703.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 694.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 684.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 683.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 673.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 660.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 658.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 658.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 657.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 655.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 651.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 646.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 635.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 631.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 631.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 630.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 625.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 620.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 615.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 597.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 597.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 597.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 578.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 578.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 571.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 522.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 100.5
FF:10024-101D6 15,40,85 years, mixed 100.5

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