BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:115.5 nTPM
HPA Brain:547.5 nTPM
GTEx:115.5 nTPM
FANTOM5:457.7 Scaled Tags Per Million
Macaque:279.8 nTPM
Mouse:252.6 nTPM
Rat:249.4 nTPM
Pig:313.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 547.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 487.5
2586 Male, age 75, left hemisphere 754.5
2666 Male, age 74, left hemisphere 593.5
2828 Female, age 72, unknown 522.0
1827 Male, age 72, unknown 505.1
2019 Male, age 18, unknown 492.0
2411 Female, age 72, unknown 406.3
1870 Female, age 42, unknown 405.5
2219 Male, age 76, both hemispheres 402.0
1830 Male, age 51, unknown 399.8
1833 Male, age 53, unknown 394.7
Dorsal raphe nucleus
nTPM: 434.4
2047 Male, age 72, unknown 479.0
1828 Male, age 53, unknown 453.3
2016 Female, age 72, unknown 436.8
2298 Female, age 72, unknown 402.0
2750 Male, age 76, both hemispheres 400.7
Inferior colliculus
nTPM: 399.1
2849 Male, age 72, unknown 419.6
1890 Male, age 53, unknown 406.8
1848 Female, age 42, unknown 401.2
2097 Female, age 72, unknown 368.7
Median raphe nucleus
nTPM: 397.8
2220 Male, age 76, midline 397.8
Periaquaductal grey, anterior
nTPM: 516.7
1795 Male, age 51, unknown 524.0
2502 Female, age 75, unknown 520.9
1947 Male, age 18, unknown 505.1
Periaquaductal grey, dorsal
nTPM: 436.4
2850 Male, age 76, both hemispheres 458.6
1840 Male, age 53, unknown 456.5
1831 Male, age 72, unknown 435.2
2464 Female, age 72, unknown 395.4
Periaquaductal grey, lateral
nTPM: 423.2
2053 Male, age 18, unknown 468.8
2140 Male, age 76, both hemispheres 431.1
2272 Male, age 74, both hemispheres 369.6
Pretectal area
nTPM: 516.5
1816 Male, age 51, unknown 693.8
2007 Male, age 72, unknown 642.1
1815 Male, age 53, unknown 626.1
1944 Female, age 72, unknown 607.3
1817 Female, age 42, unknown 593.2
2407 Male, age 75, both hemispheres 486.1
2667 Female, age 75, unknown 441.1
2825 Male, age 18, unknown 430.6
2316 Male, age 76, right hemisphere 388.6
2273 Male, age 74, both hemispheres 387.3
2224 Female, age 72, unknown 385.1
Red nucleus
nTPM: 504.4
2588 Male, age 74, left hemisphere 705.1
2584 Male, age 75, left hemisphere 626.3
2503 Female, age 72, unknown 587.9
2725 Female, age 75, unknown 513.6
2785 Male, age 18, unknown 502.0
1821 Female, age 72, unknown 488.4
1865 Male, age 51, unknown 469.7
1904 Male, age 53, unknown 462.0
2769 Male, age 72, unknown 433.2
1954 Female, age 42, unknown 429.7
2823 Male, age 76, right hemisphere 418.3
2227 Male, age 72, unknown 416.7
Substantia nigra
nTPM: 547.5
2665 Male, age 74, both hemispheres 639.8
1916 Female, age 42, unknown 588.9
1851 Male, age 51, unknown 565.3
1889 Female, age 72, unknown 551.7
2583 Male, age 75, right hemisphere 546.1
1941 Male, age 53, unknown 545.2
2590 Female, age 75, unknown 542.0
2699 Male, age 18, unknown 503.6
2241 Male, age 72, unknown 499.1
2409 Female, age 72, unknown 493.6
Superior colliculus
nTPM: 506.7
2664 Male, age 75, both hemispheres 597.0
2261 Male, age 18, unknown 564.5
2668 Female, age 75, unknown 557.4
2087 Female, age 72, unknown 537.5
2587 Male, age 74, left hemisphere 509.1
1796 Male, age 53, unknown 504.2
1995 Male, age 72, unknown 482.2
1913 Female, age 42, unknown 459.7
1839 Male, age 51, unknown 439.0
1895 Male, age 76, right hemisphere 416.9
Ventral tegmental area
nTPM: 447.9
2410 Female, age 72, unknown 486.7
1915 Female, age 42, unknown 469.4
1942 Male, age 51, unknown 448.8
2223 Female, age 72, unknown 433.8
2218 Male, age 76, both hemispheres 429.3
2021 Male, age 53, unknown 419.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 115.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.5
Samples: 183

Max nTPM: 275.0
Min nTPM: 29.9
Std nTPM: 44.3
Median nTPM: 106.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 275.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 262.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 247.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 231.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 226.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 225.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 222.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 219.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 217.6
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 200.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 199.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 457.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 457.7
FF:10158-103A5 76 years, female 457.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 279.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 279.8
Samples: 1

Max nTPM: 279.8
Min nTPM: 279.8
Sample A 279.8
Midbrain
nTPM: 249.8
Samples: 1

Max nTPM: 249.8
Min nTPM: 249.8
Sample A 249.8
Superior colliculi
nTPM: 276.2
Samples: 1

Max nTPM: 276.2
Min nTPM: 276.2
Sample A 276.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 313.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 259.2
Samples: 3

Max nTPM: 271.9
Min nTPM: 237.7
Sample A Female 268.1
Sample B Female 237.7
Sample C Male 271.9
Midbrain
nTPM: 294.6
Samples: 3

Max nTPM: 398.8
Min nTPM: 210.5
Sample B Female 210.5
Sample C Male 398.8
Sample D Male 274.5
Periaqueductal gray
nTPM: 195.6
Samples: 3

Max nTPM: 218.9
Min nTPM: 175.8
Sample B Female 192.0
Sample C Male 218.9
Sample D Male 175.8
Superior colliculi
nTPM: 313.6
Samples: 4

Max nTPM: 339.5
Min nTPM: 284.6
Sample A Female 284.6
Sample B Female 327.9
Sample C Male 339.5
Sample D Male 302.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 252.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 252.6
Samples: 4

Max nTPM: 269.7
Min nTPM: 224.9
Sample A 224.9
Sample B 247.0
Sample C 268.9
Sample D 269.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 249.4
Rat sample Sample description nTPM
Midbrain
nTPM: 249.4
Samples: 4

Max nTPM: 257.8
Min nTPM: 238.3
Sample A 256.7
Sample A 244.7
Sample A 238.3
Sample A 257.8

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