MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.8 nTPM
HPA Brain:30.6 nTPM
GTEx:37.8 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:0.2 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.6
2586 Male, age 75, left hemisphere 41.0
2666 Male, age 74, left hemisphere 35.8
1870 Female, age 42, unknown 30.6
2411 Female, age 72, unknown 30.3
1827 Male, age 72, unknown 28.7
2828 Female, age 72, unknown 28.0
2019 Male, age 18, unknown 27.3
1830 Male, age 51, unknown 26.0
1833 Male, age 53, unknown 25.2
2219 Male, age 76, both hemispheres 22.9
Dorsal raphe nucleus
nTPM: 30.2
2298 Female, age 72, unknown 34.6
2047 Male, age 72, unknown 33.1
1828 Male, age 53, unknown 29.6
2016 Female, age 72, unknown 27.1
2750 Male, age 76, both hemispheres 26.6
Inferior colliculus
nTPM: 26.5
2097 Female, age 72, unknown 28.0
1890 Male, age 53, unknown 26.9
1848 Female, age 42, unknown 25.6
2849 Male, age 72, unknown 25.4
Median raphe nucleus
nTPM: 29.2
2220 Male, age 76, midline 29.2
Periaquaductal grey, anterior
nTPM: 29.2
1947 Male, age 18, unknown 30.9
1795 Male, age 51, unknown 29.3
2502 Female, age 75, unknown 27.3
Periaquaductal grey, dorsal
nTPM: 24.4
1840 Male, age 53, unknown 26.7
2850 Male, age 76, both hemispheres 25.2
1831 Male, age 72, unknown 23.6
2464 Female, age 72, unknown 22.1
Periaquaductal grey, lateral
nTPM: 22.9
2053 Male, age 18, unknown 24.7
2140 Male, age 76, both hemispheres 22.4
2272 Male, age 74, both hemispheres 21.7
Pretectal area
nTPM: 27.7
1817 Female, age 42, unknown 33.7
2007 Male, age 72, unknown 31.0
2667 Female, age 75, unknown 29.7
1815 Male, age 53, unknown 29.5
1816 Male, age 51, unknown 29.5
1944 Female, age 72, unknown 29.4
2224 Female, age 72, unknown 27.2
2825 Male, age 18, unknown 26.1
2273 Male, age 74, both hemispheres 23.5
2407 Male, age 75, both hemispheres 23.0
2316 Male, age 76, right hemisphere 21.7
Red nucleus
nTPM: 28.6
1821 Female, age 72, unknown 33.9
1954 Female, age 42, unknown 31.6
1865 Male, age 51, unknown 30.6
1904 Male, age 53, unknown 29.9
2725 Female, age 75, unknown 29.4
2785 Male, age 18, unknown 29.0
2227 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 27.8
2584 Male, age 75, left hemisphere 27.2
2823 Male, age 76, right hemisphere 27.1
2769 Male, age 72, unknown 26.8
2588 Male, age 74, left hemisphere 21.3
Substantia nigra
nTPM: 30.6
1916 Female, age 42, unknown 38.3
2409 Female, age 72, unknown 36.1
1851 Male, age 51, unknown 33.3
2583 Male, age 75, right hemisphere 32.9
2241 Male, age 72, unknown 30.8
1889 Female, age 72, unknown 29.1
1941 Male, age 53, unknown 27.4
2699 Male, age 18, unknown 27.3
2590 Female, age 75, unknown 26.1
2665 Male, age 74, both hemispheres 24.2
Superior colliculus
nTPM: 25.6
1796 Male, age 53, unknown 29.5
2664 Male, age 75, both hemispheres 29.4
2668 Female, age 75, unknown 28.2
2261 Male, age 18, unknown 27.4
1913 Female, age 42, unknown 24.8
2587 Male, age 74, left hemisphere 24.8
1839 Male, age 51, unknown 23.6
2087 Female, age 72, unknown 23.3
1995 Male, age 72, unknown 22.9
1895 Male, age 76, right hemisphere 22.1
Ventral tegmental area
nTPM: 28.3
2410 Female, age 72, unknown 32.3
1915 Female, age 42, unknown 29.4
2218 Male, age 76, both hemispheres 28.1
2223 Female, age 72, unknown 28.1
1942 Male, age 51, unknown 26.7
2021 Male, age 53, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.8
Samples: 183

Max nTPM: 65.6
Min nTPM: 20.2
Std nTPM: 8.2
Median nTPM: 36.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 65.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 63.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 61.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 56.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 55.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 55.6
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 54.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 53.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 52.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 51.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.3
Samples: 4

Max nTPM: 56.6
Min nTPM: 39.6
Sample A Female 56.6
Sample B Female 39.6
Sample C Male 45.9
Sample D Male 42.9
Midbrain
nTPM: 49.3
Samples: 4

Max nTPM: 62.5
Min nTPM: 41.9
Sample A Female 62.5
Sample B Female 41.9
Sample C Male 47.5
Sample D Male 45.3
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 41.3
Min nTPM: 36.2
Sample B Female 36.5
Sample C Male 41.3
Sample D Male 36.2
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 60.7
Min nTPM: 45.8
Sample A Female 60.7
Sample B Female 45.8
Sample C Male 50.1
Sample D Male 46.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.0
Sample A Male 0.9
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68300950 Antisense, RP_041129_02_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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