HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:336.2 nTPM
HPA Brain:507.2 nTPM
GTEx:336.2 nTPM
FANTOM5:661.9 Scaled Tags Per Million
Pig:575.7 nTPM
Mouse:511.9 nTPM
Allen mouse:19.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023977Antibody CAB005388
Glial cells LowMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 507.2
Sample id Sample description nTPM
Hippocampus
nTPM: 390.9
1898 Male, age 80, left hemisphere 485.5
2621 Female, age 67, right hemisphere 431.6
1855 Male, age 76, left hemisphere 396.1
2529 Female, age 94, left hemisphere 391.0
1911 Female, age 85, right hemisphere 333.5
2148 Female, age 91, left hemisphere 307.7
Dentate gyrus
nTPM: 407.6
2530 Female, age 94, left hemisphere 543.4
2010 Male, age 76, both hemispheres 466.1
1927 Female, age 91, both hemispheres 401.1
2246 Female, age 85, both hemispheres 356.6
2531 Female, age 67, both hemispheres 344.8
2528 Male, age 74, both hemispheres 333.7
Entorhinal gyrus
nTPM: 436.5
2764 Male, age 80, right hemisphere 511.6
1938 Female, age 85, left hemisphere 470.7
1787 Male, age 76, left hemisphere 437.2
2613 Female, age 94, left hemisphere 416.5
2686 Male, age 75, right hemisphere 398.4
2117 Female, age 91, right hemisphere 384.9
Hippocampus, CA1
nTPM: 408.9
2749 Male, age 80, left hemisphere 567.8
2045 Male, age 76, both hemispheres 433.4
1873 Female, age 85, both hemispheres 402.9
2527 Male, age 74, both hemispheres 336.7
2082 Female, age 91, right hemisphere 303.7
Hippocampus, CA2
nTPM: 418.6
1892 Male, age 76, both hemispheres 532.0
1963 Male, age 80, left hemisphere 471.7
1940 Female, age 85, left hemisphere 420.3
2437 Female, age 94, left hemisphere 389.7
2249 Male, age 74, both hemispheres 372.9
2113 Female, age 91, right hemisphere 325.1
Hippocampus, CA3
nTPM: 383.3
1867 Male, age 76, both hemispheres 509.5
2137 Male, age 80, left hemisphere 411.6
1891 Female, age 85, both hemispheres 393.9
2620 Female, age 94, left hemisphere 373.2
2861 Female, age 67, both hemispheres 311.2
2436 Male, age 74, both hemispheres 300.3
Parahippocampal cortex
nTPM: 415.6
1850 Male, age 80, both hemispheres 599.2
1933 Female, age 85, both hemispheres 459.4
2018 Male, age 76, both hemispheres 455.4
2532 Female, age 72, left hemisphere 443.1
1990 Female, age 91, right hemisphere 436.1
2245 Female, age 91, both hemispheres 388.1
2692 Male, age 74, both hemispheres 382.0
2693 Female, age 94, both hemispheres 364.6
2250 Female, age 67, right hemisphere 334.9
2622 Female, age 67, right hemisphere 293.2
Perirhinal gyrus
nTPM: 507.2
1841 Female, age 85, right hemisphere 563.9
1847 Female, age 91, left hemisphere 551.1
1794 Male, age 80, right hemisphere 549.0
2848 Male, age 76, right hemisphere 450.1
2521 Female, age 94, right hemisphere 421.9
Subiculum
nTPM: 397.7
1901 Male, age 80, both hemispheres 465.9
1977 Female, age 85, both hemispheres 449.2
2042 Male, age 76, both hemispheres 409.6
2438 Female, age 94, left hemisphere 406.3
2619 Male, age 74, both hemispheres 356.8
2729 Female, age 91, right hemisphere 298.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 336.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 336.2
Samples: 255

Max nTPM: 805.2
Min nTPM: 117.7
Std nTPM: 85.5
Median nTPM: 325.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 805.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 655.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 577.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 572.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 551.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 542.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 532.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 531.7
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 506.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 504.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 494.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 661.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 661.9
FF:10169-103B7 60 years, female 735.3
FF:10153-102I9 76 years, female 588.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 575.7
Pig sample Sample description nTPM
Subiculum
nTPM: 498.3
Samples: 4

Max nTPM: 607.9
Min nTPM: 448.0
Sample A Female 607.9
Sample B Female 461.7
Sample C Male 448.0
Sample D Male 475.7
Dorsal hippocampus
nTPM: 575.7
Samples: 4

Max nTPM: 771.6
Min nTPM: 424.6
Sample A Female 771.6
Sample B Female 581.5
Sample C Male 525.0
Sample D Male 424.6
Entorhinal cortex
nTPM: 461.2
Samples: 4

Max nTPM: 535.2
Min nTPM: 384.9
Sample A Female 499.7
Sample B Female 535.2
Sample C Male 425.1
Sample D Male 384.9
Ventral hippocampus
nTPM: 479.2
Samples: 4

Max nTPM: 618.5
Min nTPM: 361.4
Sample A Female 618.5
Sample B Female 361.4
Sample C Male 422.7
Sample D Male 514.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 511.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 511.9
Samples: 4

Max nTPM: 591.3
Min nTPM: 437.4
Sample A Male 512.0
Sample B Male 591.3
Sample C Female 437.4
Sample D Female 507.0
Hippocampal formation
nTPM: 443.9
Samples: 4

Max nTPM: 497.5
Min nTPM: 383.6
Sample A Male 457.5
Sample B Male 437.0
Sample C Female 497.5
Sample D Female 383.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 19.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.7
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 20.2
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 19.3

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