BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:396.5 nTPM
HPA Brain:605.6 nTPM
GTEx:396.5 nTPM
FANTOM5:717.1 Scaled Tags Per Million
Macaque:530.3 nTPM
Mouse:225.5 nTPM
Rat:334.5 nTPM
Pig:604.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 605.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 557.9
2666 Male, age 74, left hemisphere 654.9
2411 Female, age 72, unknown 634.1
2586 Male, age 75, left hemisphere 627.6
2019 Male, age 18, unknown 572.6
1870 Female, age 42, unknown 566.8
1827 Male, age 72, unknown 534.7
1830 Male, age 51, unknown 533.9
1833 Male, age 53, unknown 525.5
2828 Female, age 72, unknown 497.5
2219 Male, age 76, both hemispheres 431.1
Dorsal raphe nucleus
nTPM: 533.4
2047 Male, age 72, unknown 599.0
1828 Male, age 53, unknown 568.0
2750 Male, age 76, both hemispheres 564.7
2298 Female, age 72, unknown 503.0
2016 Female, age 72, unknown 432.5
Inferior colliculus
nTPM: 457.7
1890 Male, age 53, unknown 496.2
1848 Female, age 42, unknown 464.8
2097 Female, age 72, unknown 447.3
2849 Male, age 72, unknown 422.6
Median raphe nucleus
nTPM: 604.7
2220 Male, age 76, midline 604.7
Periaquaductal grey, anterior
nTPM: 457.7
1947 Male, age 18, unknown 506.5
2502 Female, age 75, unknown 434.8
1795 Male, age 51, unknown 431.7
Periaquaductal grey, dorsal
nTPM: 407.9
1831 Male, age 72, unknown 432.7
2850 Male, age 76, both hemispheres 415.0
2464 Female, age 72, unknown 403.3
1840 Male, age 53, unknown 380.6
Periaquaductal grey, lateral
nTPM: 393.0
2272 Male, age 74, both hemispheres 419.3
2053 Male, age 18, unknown 414.0
2140 Male, age 76, both hemispheres 345.7
Pretectal area
nTPM: 484.6
2007 Male, age 72, unknown 604.3
1816 Male, age 51, unknown 580.0
1817 Female, age 42, unknown 555.6
1815 Male, age 53, unknown 533.8
1944 Female, age 72, unknown 518.2
2407 Male, age 75, both hemispheres 454.4
2667 Female, age 75, unknown 446.5
2825 Male, age 18, unknown 443.7
2224 Female, age 72, unknown 421.8
2316 Male, age 76, right hemisphere 387.7
2273 Male, age 74, both hemispheres 384.8
Red nucleus
nTPM: 596.5
1821 Female, age 72, unknown 745.5
2588 Male, age 74, left hemisphere 636.2
1865 Male, age 51, unknown 614.0
2503 Female, age 72, unknown 612.0
1954 Female, age 42, unknown 594.9
1904 Male, age 53, unknown 591.7
2725 Female, age 75, unknown 589.6
2584 Male, age 75, left hemisphere 589.3
2785 Male, age 18, unknown 565.6
2769 Male, age 72, unknown 558.6
2227 Male, age 72, unknown 544.4
2823 Male, age 76, right hemisphere 516.2
Substantia nigra
nTPM: 605.6
1916 Female, age 42, unknown 782.5
1941 Male, age 53, unknown 706.8
2583 Male, age 75, right hemisphere 652.6
1851 Male, age 51, unknown 645.7
1889 Female, age 72, unknown 603.5
2241 Male, age 72, unknown 594.2
2699 Male, age 18, unknown 565.3
2590 Female, age 75, unknown 507.1
2665 Male, age 74, both hemispheres 500.3
2409 Female, age 72, unknown 498.4
Superior colliculus
nTPM: 493.7
2668 Female, age 75, unknown 657.4
2587 Male, age 74, left hemisphere 533.5
1913 Female, age 42, unknown 514.6
1895 Male, age 76, right hemisphere 496.3
2261 Male, age 18, unknown 486.0
1839 Male, age 51, unknown 471.4
2087 Female, age 72, unknown 456.5
1796 Male, age 53, unknown 454.1
2664 Male, age 75, both hemispheres 443.0
1995 Male, age 72, unknown 424.5
Ventral tegmental area
nTPM: 552.2
2410 Female, age 72, unknown 644.5
2223 Female, age 72, unknown 641.3
1915 Female, age 42, unknown 572.5
2218 Male, age 76, both hemispheres 555.8
1942 Male, age 51, unknown 462.2
2021 Male, age 53, unknown 436.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 396.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 396.5
Samples: 183

Max nTPM: 1015.8
Min nTPM: 194.4
Std nTPM: 130.4
Median nTPM: 379.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1015.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 852.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 837.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 832.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 794.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 716.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 695.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 665.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 653.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 613.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 609.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 717.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 717.1
FF:10158-103A5 76 years, female 717.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 530.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 530.3
Samples: 1

Max nTPM: 530.3
Min nTPM: 530.3
Sample A 530.3
Midbrain
nTPM: 356.7
Samples: 1

Max nTPM: 356.7
Min nTPM: 356.7
Sample A 356.7
Superior colliculi
nTPM: 454.0
Samples: 1

Max nTPM: 454.0
Min nTPM: 454.0
Sample A 454.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 604.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 529.0
Samples: 3

Max nTPM: 673.2
Min nTPM: 359.6
Sample A Female 673.2
Sample B Female 359.6
Sample C Male 554.2
Midbrain
nTPM: 596.3
Samples: 3

Max nTPM: 702.0
Min nTPM: 463.9
Sample B Female 463.9
Sample C Male 702.0
Sample D Male 622.9
Periaqueductal gray
nTPM: 406.5
Samples: 3

Max nTPM: 442.4
Min nTPM: 377.3
Sample B Female 399.8
Sample C Male 442.4
Sample D Male 377.3
Superior colliculi
nTPM: 604.1
Samples: 4

Max nTPM: 798.9
Min nTPM: 357.8
Sample A Female 690.9
Sample B Female 357.8
Sample C Male 798.9
Sample D Male 568.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 225.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 225.5
Samples: 4

Max nTPM: 237.3
Min nTPM: 204.5
Sample A 204.5
Sample B 229.1
Sample C 231.0
Sample D 237.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 334.5
Rat sample Sample description nTPM
Midbrain
nTPM: 334.5
Samples: 4

Max nTPM: 347.2
Min nTPM: 324.0
Sample A 324.0
Sample A 347.2
Sample A 335.8
Sample A 331.1

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