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  • HPCAL1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:127.1 nTPM
HPA Brain:176.2 nTPM
GTEx:127.1 nTPM
FANTOM5:81.2 Scaled Tags Per Million
Pig:138.7 nTPM
Mouse:195.8 nTPM
Allen mouse:6.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.2
Sample id Sample description nTPM
Amygdala
nTPM: 142.8
2814 Male, age 76, right hemisphere 181.7
2517 Female, age 94, left hemisphere 171.9
1987 Female, age 91, left hemisphere 165.3
2695 Female, age 67, right hemisphere 107.8
2514 Male, age 75, right hemisphere 87.4
Basal amygdala
nTPM: 163.1
2685 Female, age 94, left hemisphere 251.0
2110 Male, age 80, left hemisphere 185.2
1955 Male, age 76, both hemispheres 150.0
2243 Female, age 91, right hemisphere 138.6
2827 Female, age 67, right hemisphere 134.8
2609 Male, age 75, right hemisphere 118.9
Central amygdala
nTPM: 176.2
1905 Male, age 76, both hemispheres 220.9
2701 Female, age 91, right hemisphere 206.2
2239 Male, age 80, left hemisphere 172.0
2515 Male, age 75, right hemisphere 154.1
2826 Female, age 94, left hemisphere 127.8
Corticomedial amygdala
nTPM: 164.8
2535 Female, age 67, right hemisphere 239.5
2242 Female, age 91, right hemisphere 210.0
2429 Female, age 94, left hemisphere 158.8
2240 Male, age 76, both hemispheres 138.2
2829 Male, age 80, left hemisphere 131.5
2428 Male, age 75, right hemisphere 110.8
Lateral amygdala
nTPM: 127.7
1883 Male, age 76, both hemispheres 190.4
2255 Female, age 91, right hemisphere 182.9
2516 Male, age 75, right hemisphere 109.9
2830 Female, age 67, right hemisphere 109.0
2534 Female, age 94, left hemisphere 102.6
2256 Male, age 80, left hemisphere 71.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.1
Samples: 181

Max nTPM: 427.6
Min nTPM: 34.2
Std nTPM: 67.6
Median nTPM: 108.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 427.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 403.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 395.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 311.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 308.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 293.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 275.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 266.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 264.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 252.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 249.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 248.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 237.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 233.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 228.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 223.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 219.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 214.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 213.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 212.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 202.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 200.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 198.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 194.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 188.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 179.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 177.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 177.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 176.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 176.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 175.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 173.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 170.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 167.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 162.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 160.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 158.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 158.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 157.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 157.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 157.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 157.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 157.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 156.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 154.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 153.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 152.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 150.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 149.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 147.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 147.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 147.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 146.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 146.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 146.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 145.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 144.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 143.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 142.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 141.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 139.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 134.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 134.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 134.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 132.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 129.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 121.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 120.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 118.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 117.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 115.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 114.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 113.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 112.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 111.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 109.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 108.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 108.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 107.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 107.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 104.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 103.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 103.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 102.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 101.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 101.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 101.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 98.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 98.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 97.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 97.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 96.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 95.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 95.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 94.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 94.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 93.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 90.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 88.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 88.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 87.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 87.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 86.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 85.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 85.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 83.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 83.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 83.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 82.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 81.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 81.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 80.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 80.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 79.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 77.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 75.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 74.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 73.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 70.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 69.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 67.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 67.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 66.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 65.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 64.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 64.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 63.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 62.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 59.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 57.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 56.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 54.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 54.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 54.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 53.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 52.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 52.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 51.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 49.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 47.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 45.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 45.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 43.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 35.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.2
FF:10151-102I7 76 years, female 81.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
Pig sample Sample description nTPM
Amygdala
nTPM: 138.7
Samples: 4

Max nTPM: 187.7
Min nTPM: 70.3
Sample A Female 182.8
Sample B Female 70.3
Sample C Male 114.0
Sample D Male 187.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 195.8
Samples: 4

Max nTPM: 250.4
Min nTPM: 129.6
Sample A Male 250.4
Sample B Male 195.0
Sample C Female 129.6
Sample D Female 208.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
74581395 Antisense, RP_060117_02_C04, Mouse strain C57BL/6J (56 days, male) 7.5
69080026 Antisense, RP_050324_01_E04, Mouse strain C57BL/6J (56 days, male) 4.5

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