A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.2
nTPM
Monaco:
85.3
nTPM
Schmiedel:
84.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.2
HPA sample
nTPM
NK-cell nTPM: 16.2
Samples: 6
Max nTPM: 34.2
Min nTPM: 5.2
P10809_1013
34.2
P10809_1033
15.9
P10809_1052
5.2
P10809_1071
19.1
P10809_1093
11.4
P10809_1103
11.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.3
Monaco sample
nTPM
NK-cell nTPM: 85.3
Samples: 4
Max nTPM: 123.9
Min nTPM: 47.6
RHH5316_R3683
95.2
RHH5224_R3596
47.6
RHH5253_R3625
74.4
RHH5282_R3654
123.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.4
Schmiedel sample id
TPM
NK-cell TPM: 84.4
Samples: 90
Max TPM: 143.0
Min TPM: 57.8
NK_1
143.0
NK_2
126.1
NK_3
121.8
NK_4
117.5
NK_5
116.7
NK_6
116.1
NK_7
114.6
NK_8
113.8
NK_9
113.4
NK_10
108.1
NK_11
105.5
NK_12
105.3
NK_13
104.7
NK_14
103.0
NK_15
98.0
NK_16
96.2
NK_17
96.2
NK_18
94.5
NK_19
94.3
NK_20
92.4
NK_21
91.8
NK_22
91.6
NK_23
91.3
NK_24
91.1
NK_25
90.8
NK_26
90.5
NK_27
89.6
NK_28
89.5
NK_29
88.6
NK_30
88.3
NK_31
87.1
NK_32
87.1
NK_33
86.1
NK_34
85.8
NK_35
85.4
NK_36
85.4
NK_37
84.6
NK_38
83.4
NK_39
83.2
NK_40
83.2
NK_41
82.8
NK_42
82.7
NK_43
82.3
NK_44
81.9
NK_45
81.7
NK_46
80.8
NK_47
80.5
NK_48
80.3
NK_49
80.1
NK_50
79.7
NK_51
79.7
NK_52
79.3
NK_53
78.9
NK_54
78.9
NK_55
78.5
NK_56
78.3
NK_57
76.9
NK_58
76.6
NK_59
76.5
NK_60
76.4
NK_61
76.0
NK_62
75.0
NK_63
74.4
NK_64
74.2
NK_65
73.8
NK_66
73.8
NK_67
73.4
NK_68
72.6
NK_69
72.6
NK_70
72.3
NK_71
72.1
NK_72
71.7
NK_73
71.3
NK_74
70.9
NK_75
70.0
NK_76
69.9
NK_77
69.7
NK_78
68.2
NK_79
67.9
NK_80
67.6
NK_81
67.6
NK_82
67.5
NK_83
66.6
NK_84
66.2
NK_85
64.1
NK_86
62.6
NK_87
62.4
NK_88
60.2
NK_89
58.5
NK_90
57.8
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