HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA Brain:31.1 nTPM
GTEx:46.6 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:63.9 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 31.1
Sample id Sample description nTPM
Hippocampus
nTPM: 31.1
1898 Male, age 80, left hemisphere 37.4
1911 Female, age 85, right hemisphere 33.4
1855 Male, age 76, left hemisphere 33.1
2529 Female, age 94, left hemisphere 32.7
2621 Female, age 67, right hemisphere 27.9
2148 Female, age 91, left hemisphere 22.4
Dentate gyrus
nTPM: 28.6
2530 Female, age 94, left hemisphere 37.8
2010 Male, age 76, both hemispheres 31.8
1927 Female, age 91, both hemispheres 27.1
2246 Female, age 85, both hemispheres 26.3
2528 Male, age 74, both hemispheres 26.3
2531 Female, age 67, both hemispheres 22.2
Entorhinal gyrus
nTPM: 24.1
2117 Female, age 91, right hemisphere 33.8
1938 Female, age 85, left hemisphere 28.0
1787 Male, age 76, left hemisphere 25.6
2686 Male, age 75, right hemisphere 22.8
2764 Male, age 80, right hemisphere 18.6
2613 Female, age 94, left hemisphere 15.9
Hippocampus, CA1
nTPM: 27.2
1873 Female, age 85, both hemispheres 31.4
2527 Male, age 74, both hemispheres 28.0
2045 Male, age 76, both hemispheres 27.5
2749 Male, age 80, left hemisphere 25.4
2082 Female, age 91, right hemisphere 23.8
Hippocampus, CA2
nTPM: 30.2
1940 Female, age 85, left hemisphere 33.7
1892 Male, age 76, both hemispheres 31.2
1963 Male, age 80, left hemisphere 31.0
2249 Male, age 74, both hemispheres 30.7
2437 Female, age 94, left hemisphere 28.0
2113 Female, age 91, right hemisphere 26.5
Hippocampus, CA3
nTPM: 25.8
1867 Male, age 76, both hemispheres 38.3
1891 Female, age 85, both hemispheres 37.0
2436 Male, age 74, both hemispheres 23.7
2137 Male, age 80, left hemisphere 22.7
2861 Female, age 67, both hemispheres 20.5
2620 Female, age 94, left hemisphere 12.5
Parahippocampal cortex
nTPM: 26.5
2018 Male, age 76, both hemispheres 34.9
1850 Male, age 80, both hemispheres 30.6
2250 Female, age 67, right hemisphere 30.2
1990 Female, age 91, right hemisphere 27.5
2693 Female, age 94, both hemispheres 27.4
2532 Female, age 72, left hemisphere 25.9
1933 Female, age 85, both hemispheres 25.6
2692 Male, age 74, both hemispheres 23.8
2245 Female, age 91, both hemispheres 23.5
2622 Female, age 67, right hemisphere 15.3
Perirhinal gyrus
nTPM: 25.6
2521 Female, age 94, right hemisphere 26.5
1841 Female, age 85, right hemisphere 26.3
2848 Male, age 76, right hemisphere 26.1
1794 Male, age 80, right hemisphere 25.2
1847 Female, age 91, left hemisphere 23.8
Subiculum
nTPM: 30.8
2042 Male, age 76, both hemispheres 38.9
1901 Male, age 80, both hemispheres 36.2
2438 Female, age 94, left hemisphere 33.2
2729 Female, age 91, right hemisphere 29.5
1977 Female, age 85, both hemispheres 28.5
2619 Male, age 74, both hemispheres 18.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 46.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.6
Samples: 255

Max nTPM: 99.2
Min nTPM: 19.7
Std nTPM: 17.1
Median nTPM: 42.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 99.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 95.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 94.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 93.1
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 91.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 90.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 88.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 86.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 85.5
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 84.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 84.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.6
FF:10153-102I9 76 years, female 59.5
FF:10169-103B7 60 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 53.6
Pig sample Sample description nTPM
Subiculum
nTPM: 41.8
Samples: 4

Max nTPM: 44.7
Min nTPM: 37.1
Sample A Female 44.7
Sample B Female 42.7
Sample C Male 37.1
Sample D Male 42.5
Dorsal hippocampus
nTPM: 53.6
Samples: 4

Max nTPM: 64.4
Min nTPM: 42.1
Sample A Female 59.5
Sample B Female 48.5
Sample C Male 64.4
Sample D Male 42.1
Entorhinal cortex
nTPM: 42.7
Samples: 4

Max nTPM: 51.3
Min nTPM: 38.5
Sample A Female 38.5
Sample B Female 51.3
Sample C Male 40.3
Sample D Male 40.6
Ventral hippocampus
nTPM: 44.2
Samples: 4

Max nTPM: 48.9
Min nTPM: 37.6
Sample A Female 46.5
Sample B Female 43.8
Sample C Male 37.6
Sample D Male 48.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 63.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 46.1
Samples: 4

Max nTPM: 54.5
Min nTPM: 35.4
Sample A Male 54.5
Sample B Male 44.8
Sample C Female 49.6
Sample D Female 35.4
Hippocampal formation
nTPM: 64.0
Samples: 4

Max nTPM: 71.4
Min nTPM: 56.7
Sample A Male 56.7
Sample B Male 66.0
Sample C Female 71.4
Sample D Female 61.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
75831752 Antisense, RP_060601_02_D01, Mouse strain C57BL/6J (56 days, male) 1.0

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