A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
2.3
nTPM
Schmiedel:
53.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.3
P10809_1003
0.3
P10809_1020
0.4
P10809_1039
0.4
P10809_1058
0.3
P10809_1080
0.3
P10809_1107
0.3
Intermediate monocyte nTPM: 0.6
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1004
0.5
P10809_1023
1.0
P10809_1042
0.6
P10809_1061
0.0
P10809_1081
0.5
P10809_1108
0.8
Non-classical monocyte nTPM: 0.2
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.3
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
0.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
Monaco sample
nTPM
Classical monocyte nTPM: 2.4
Samples: 4
Max nTPM: 4.5
Min nTPM: 1.3
RHH5313_R3680
4.5
RHH5221_R3593
1.3
RHH5250_R3622
2.0
RHH5279_R3651
1.6
Intermediate monocyte nTPM: 1.9
Samples: 4
Max nTPM: 2.3
Min nTPM: 1.2
RHH5314_R3681
2.3
RHH5222_R3594
1.2
RHH5251_R3623
2.0
RHH5280_R3652
2.2
Non-classical monocyte nTPM: 1.3
Samples: 4
Max nTPM: 2.2
Min nTPM: 0.1
RHH5315_R3682
1.6
RHH5223_R3595
0.1
RHH5252_R3624
2.2
RHH5281_R3653
1.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.0
Schmiedel sample id
TPM
Classical monocyte TPM: 53.0
Samples: 91
Max TPM: 87.4
Min TPM: 23.7
MONOCYTES_1
87.4
MONOCYTES_2
84.9
MONOCYTES_3
84.9
MONOCYTES_4
82.2
MONOCYTES_5
77.7
MONOCYTES_6
76.6
MONOCYTES_7
75.3
MONOCYTES_8
74.9
MONOCYTES_9
74.7
MONOCYTES_10
74.3
MONOCYTES_11
74.2
MONOCYTES_12
73.4
MONOCYTES_13
71.0
MONOCYTES_14
67.7
MONOCYTES_15
65.7
MONOCYTES_16
65.5
MONOCYTES_17
64.2
MONOCYTES_18
63.1
MONOCYTES_19
62.0
MONOCYTES_20
61.8
MONOCYTES_21
61.5
MONOCYTES_22
61.3
MONOCYTES_23
61.1
MONOCYTES_24
60.2
MONOCYTES_25
60.1
MONOCYTES_26
60.0
MONOCYTES_27
59.6
MONOCYTES_28
59.3
MONOCYTES_29
59.2
MONOCYTES_30
58.9
MONOCYTES_31
58.6
MONOCYTES_32
58.6
MONOCYTES_33
58.1
MONOCYTES_34
57.8
MONOCYTES_35
57.3
MONOCYTES_36
57.0
MONOCYTES_37
55.8
MONOCYTES_38
55.2
MONOCYTES_39
54.9
MONOCYTES_40
54.6
MONOCYTES_41
54.4
MONOCYTES_42
54.1
MONOCYTES_43
52.5
MONOCYTES_44
51.6
MONOCYTES_45
50.6
MONOCYTES_46
50.4
MONOCYTES_47
50.3
MONOCYTES_48
50.2
MONOCYTES_49
49.5
MONOCYTES_50
49.5
MONOCYTES_51
49.4
MONOCYTES_52
48.9
MONOCYTES_53
48.0
MONOCYTES_54
48.0
MONOCYTES_55
48.0
MONOCYTES_56
47.6
MONOCYTES_57
47.1
MONOCYTES_58
47.1
MONOCYTES_59
46.4
MONOCYTES_60
46.1
MONOCYTES_61
46.1
MONOCYTES_62
45.9
MONOCYTES_63
45.7
MONOCYTES_64
45.6
MONOCYTES_65
44.2
MONOCYTES_66
44.1
MONOCYTES_67
44.0
MONOCYTES_68
43.7
MONOCYTES_69
43.3
MONOCYTES_70
42.2
MONOCYTES_71
42.0
MONOCYTES_72
41.7
MONOCYTES_73
41.2
MONOCYTES_74
40.1
MONOCYTES_75
39.7
MONOCYTES_76
39.2
MONOCYTES_77
38.8
MONOCYTES_78
38.4
MONOCYTES_79
37.9
MONOCYTES_80
37.2
MONOCYTES_81
36.9
MONOCYTES_82
36.7
MONOCYTES_83
36.0
MONOCYTES_84
35.1
MONOCYTES_85
34.9
MONOCYTES_86
33.2
MONOCYTES_87
32.6
MONOCYTES_88
32.2
MONOCYTES_89
31.1
MONOCYTES_90
26.3
MONOCYTES_91
23.7
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Non-classical monocyte TPM: 24.7
Samples: 90
Max TPM: 43.0
Min TPM: 11.7
M2_1
43.0
M2_2
41.6
M2_3
41.0
M2_4
40.7
M2_5
39.2
M2_6
39.1
M2_7
35.9
M2_8
35.7
M2_9
35.5
M2_10
33.2
M2_11
32.8
M2_12
32.3
M2_13
32.3
M2_14
31.6
M2_15
30.8
M2_16
30.8
M2_17
29.8
M2_18
29.7
M2_19
29.5
M2_20
29.1
M2_21
29.0
M2_22
28.6
M2_23
28.2
M2_24
28.1
M2_25
28.0
M2_26
27.8
M2_27
27.4
M2_28
27.3
M2_29
27.2
M2_30
26.8
M2_31
26.6
M2_32
26.6
M2_33
26.6
M2_34
26.5
M2_35
26.4
M2_36
26.3
M2_37
26.2
M2_38
26.1
M2_39
25.8
M2_40
25.7
M2_41
25.5
M2_42
25.1
M2_43
25.0
M2_44
24.9
M2_45
24.9
M2_46
24.7
M2_47
24.6
M2_48
24.6
M2_49
23.1
M2_50
22.9
M2_51
22.7
M2_52
22.6
M2_53
22.4
M2_54
22.0
M2_55
21.9
M2_56
21.2
M2_57
21.2
M2_58
21.0
M2_59
20.8
M2_60
20.6
M2_61
20.6
M2_62
20.2
M2_63
19.8
M2_64
19.6
M2_65
19.6
M2_66
19.2
M2_67
19.1
M2_68
19.1
M2_69
19.1
M2_70
19.0
M2_71
18.9
M2_72
18.8
M2_73
18.6
M2_74
18.4
M2_75
18.4
M2_76
18.3
M2_77
16.9
M2_78
16.9
M2_79
16.8
M2_80
16.5
M2_81
16.2
M2_82
16.0
M2_83
16.0
M2_84
16.0
M2_85
15.9
M2_86
15.8
M2_87
15.3
M2_88
14.4
M2_89
14.1
M2_90
11.7
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