MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:41.4 nTPM
GTEx:15.2 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:51.1 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2219 Male, age 76, both hemispheres 41.3
2019 Male, age 18, unknown 39.9
1870 Female, age 42, unknown 38.1
1833 Male, age 53, unknown 37.3
2411 Female, age 72, unknown 37.2
1827 Male, age 72, unknown 37.0
1830 Male, age 51, unknown 36.8
2586 Male, age 75, left hemisphere 31.7
2666 Male, age 74, left hemisphere 31.2
2828 Female, age 72, unknown 30.4
Dorsal raphe nucleus
nTPM: 36.1
1828 Male, age 53, unknown 37.7
2047 Male, age 72, unknown 37.0
2298 Female, age 72, unknown 36.8
2750 Male, age 76, both hemispheres 35.6
2016 Female, age 72, unknown 33.3
Inferior colliculus
nTPM: 41.4
2097 Female, age 72, unknown 43.4
2849 Male, age 72, unknown 42.2
1848 Female, age 42, unknown 41.8
1890 Male, age 53, unknown 38.2
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Periaquaductal grey, anterior
nTPM: 34.4
1947 Male, age 18, unknown 38.6
2502 Female, age 75, unknown 33.7
1795 Male, age 51, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 33.4
1840 Male, age 53, unknown 35.9
1831 Male, age 72, unknown 33.2
2464 Female, age 72, unknown 32.7
2850 Male, age 76, both hemispheres 31.9
Periaquaductal grey, lateral
nTPM: 34.7
2272 Male, age 74, both hemispheres 38.2
2140 Male, age 76, both hemispheres 34.0
2053 Male, age 18, unknown 31.9
Pretectal area
nTPM: 37.0
1944 Female, age 72, unknown 41.6
2007 Male, age 72, unknown 40.7
1817 Female, age 42, unknown 40.2
1816 Male, age 51, unknown 39.9
2224 Female, age 72, unknown 38.3
1815 Male, age 53, unknown 36.8
2316 Male, age 76, right hemisphere 34.9
2273 Male, age 74, both hemispheres 34.6
2667 Female, age 75, unknown 34.2
2407 Male, age 75, both hemispheres 33.6
2825 Male, age 18, unknown 32.6
Red nucleus
nTPM: 35.6
1821 Female, age 72, unknown 40.8
2725 Female, age 75, unknown 40.4
2588 Male, age 74, left hemisphere 37.7
2503 Female, age 72, unknown 37.5
1865 Male, age 51, unknown 37.2
2785 Male, age 18, unknown 35.1
2227 Male, age 72, unknown 33.8
2584 Male, age 75, left hemisphere 33.6
2823 Male, age 76, right hemisphere 33.1
1904 Male, age 53, unknown 33.0
2769 Male, age 72, unknown 33.0
1954 Female, age 42, unknown 31.9
Substantia nigra
nTPM: 39.2
1916 Female, age 42, unknown 47.0
1941 Male, age 53, unknown 43.6
1889 Female, age 72, unknown 43.5
2241 Male, age 72, unknown 42.8
2699 Male, age 18, unknown 39.0
1851 Male, age 51, unknown 36.6
2665 Male, age 74, both hemispheres 35.9
2590 Female, age 75, unknown 35.2
2409 Female, age 72, unknown 34.7
2583 Male, age 75, right hemisphere 33.2
Superior colliculus
nTPM: 35.0
1895 Male, age 76, right hemisphere 40.4
2587 Male, age 74, left hemisphere 37.5
2668 Female, age 75, unknown 37.2
2087 Female, age 72, unknown 36.4
1839 Male, age 51, unknown 35.3
2261 Male, age 18, unknown 34.6
1796 Male, age 53, unknown 34.3
1913 Female, age 42, unknown 32.9
2664 Male, age 75, both hemispheres 31.1
1995 Male, age 72, unknown 30.2
Ventral tegmental area
nTPM: 34.9
1915 Female, age 42, unknown 36.4
2223 Female, age 72, unknown 36.4
2218 Male, age 76, both hemispheres 36.3
1942 Male, age 51, unknown 34.7
2410 Female, age 72, unknown 33.8
2021 Male, age 53, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 183

Max nTPM: 38.9
Min nTPM: 8.0
Std nTPM: 4.3
Median nTPM: 14.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 24.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 23.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 23.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.7
FF:10158-103A5 76 years, female 48.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.6
Samples: 4

Max nTPM: 57.0
Min nTPM: 26.9
Sample A Female 57.0
Sample B Female 33.7
Sample C Male 48.7
Sample D Male 26.9
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 49.6
Min nTPM: 34.5
Sample A Female 34.5
Sample B Female 39.9
Sample C Male 47.3
Sample D Male 49.6
Periaqueductal gray
nTPM: 35.7
Samples: 3

Max nTPM: 41.1
Min nTPM: 31.2
Sample B Female 34.7
Sample C Male 41.1
Sample D Male 31.2
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 57.2
Min nTPM: 31.7
Sample A Female 53.6
Sample B Female 31.7
Sample C Male 57.2
Sample D Male 43.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.1
Samples: 4

Max nTPM: 53.3
Min nTPM: 49.0
Sample A Male 50.1
Sample B Male 52.0
Sample C Female 53.3
Sample D Female 49.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
413774 Antisense, RP_040809_01_C06, Mouse strain C57BL/6J (56 days, male) 2.3

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