MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA Brain:40.7 nTPM
GTEx:40.6 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:52.1 nTPM
Mouse:66.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2219 Male, age 76, both hemispheres 33.4
2411 Female, age 72, unknown 30.7
1870 Female, age 42, unknown 29.3
1827 Male, age 72, unknown 29.1
1833 Male, age 53, unknown 26.7
2019 Male, age 18, unknown 25.3
1830 Male, age 51, unknown 24.6
2666 Male, age 74, left hemisphere 24.0
2828 Female, age 72, unknown 20.8
2586 Male, age 75, left hemisphere 19.8
Dorsal raphe nucleus
nTPM: 31.9
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 35.0
1828 Male, age 53, unknown 31.0
2750 Male, age 76, both hemispheres 27.3
2016 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 28.5
2097 Female, age 72, unknown 34.0
1848 Female, age 42, unknown 27.2
2849 Male, age 72, unknown 26.4
1890 Male, age 53, unknown 26.2
Median raphe nucleus
nTPM: 40.7
2220 Male, age 76, midline 40.7
Periaquaductal grey, anterior
nTPM: 27.4
1947 Male, age 18, unknown 29.3
2502 Female, age 75, unknown 27.6
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 27.7
2850 Male, age 76, both hemispheres 30.2
1840 Male, age 53, unknown 29.6
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 24.8
Periaquaductal grey, lateral
nTPM: 28.0
2272 Male, age 74, both hemispheres 30.4
2140 Male, age 76, both hemispheres 27.0
2053 Male, age 18, unknown 26.6
Pretectal area
nTPM: 29.7
2224 Female, age 72, unknown 35.4
1944 Female, age 72, unknown 33.2
1816 Male, age 51, unknown 32.6
1817 Female, age 42, unknown 32.0
2273 Male, age 74, both hemispheres 30.9
2007 Male, age 72, unknown 30.5
1815 Male, age 53, unknown 29.2
2667 Female, age 75, unknown 28.6
2825 Male, age 18, unknown 26.5
2407 Male, age 75, both hemispheres 24.3
2316 Male, age 76, right hemisphere 23.2
Red nucleus
nTPM: 25.3
1821 Female, age 72, unknown 35.7
1954 Female, age 42, unknown 29.7
2725 Female, age 75, unknown 28.0
1904 Male, age 53, unknown 24.7
2227 Male, age 72, unknown 24.3
2588 Male, age 74, left hemisphere 24.2
1865 Male, age 51, unknown 23.8
2769 Male, age 72, unknown 23.7
2785 Male, age 18, unknown 23.5
2503 Female, age 72, unknown 22.8
2823 Male, age 76, right hemisphere 22.4
2584 Male, age 75, left hemisphere 20.7
Substantia nigra
nTPM: 33.7
2241 Male, age 72, unknown 45.0
1916 Female, age 42, unknown 43.9
1889 Female, age 72, unknown 37.0
1851 Male, age 51, unknown 36.8
1941 Male, age 53, unknown 35.5
2699 Male, age 18, unknown 34.8
2409 Female, age 72, unknown 29.3
2590 Female, age 75, unknown 28.4
2665 Male, age 74, both hemispheres 23.5
2583 Male, age 75, right hemisphere 22.3
Superior colliculus
nTPM: 24.6
2587 Male, age 74, left hemisphere 28.8
2087 Female, age 72, unknown 27.7
2261 Male, age 18, unknown 27.4
1895 Male, age 76, right hemisphere 27.1
1796 Male, age 53, unknown 26.2
1839 Male, age 51, unknown 25.9
2668 Female, age 75, unknown 25.6
1913 Female, age 42, unknown 22.4
1995 Male, age 72, unknown 17.8
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 30.9
2410 Female, age 72, unknown 35.4
1915 Female, age 42, unknown 33.1
2218 Male, age 76, both hemispheres 33.0
2223 Female, age 72, unknown 29.2
1942 Male, age 51, unknown 28.1
2021 Male, age 53, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 183

Max nTPM: 106.2
Min nTPM: 17.2
Std nTPM: 15.5
Median nTPM: 37.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 106.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 91.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 85.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 79.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 78.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 77.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 76.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 73.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 70.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 62.7
Min nTPM: 30.9
Sample A Female 62.7
Sample B Female 34.4
Sample C Male 53.2
Sample D Male 30.9
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 49.9
Min nTPM: 43.4
Sample A Female 43.4
Sample B Female 44.4
Sample C Male 49.5
Sample D Male 49.9
Periaqueductal gray
nTPM: 42.4
Samples: 3

Max nTPM: 48.9
Min nTPM: 37.7
Sample B Female 37.7
Sample C Male 48.9
Sample D Male 40.7
Superior colliculi
nTPM: 52.0
Samples: 4

Max nTPM: 68.9
Min nTPM: 33.2
Sample A Female 68.9
Sample B Female 33.2
Sample C Male 57.6
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 69.9
Min nTPM: 63.4
Sample A Male 65.2
Sample B Male 69.9
Sample C Female 63.4
Sample D Female 65.6

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