A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
9.1
nTPM
Schmiedel:
21.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Classical monocyte nTPM: 2.4
Samples: 6
Max nTPM: 3.1
Min nTPM: 1.2
P10809_1003
1.2
P10809_1020
2.3
P10809_1039
3.1
P10809_1058
2.7
P10809_1080
2.3
P10809_1107
2.7
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.0
Min nTPM: 1.1
P10809_1004
2.1
P10809_1023
2.9
P10809_1042
1.1
P10809_1061
1.9
P10809_1081
2.9
P10809_1108
3.0
Non-classical monocyte nTPM: 1.8
Samples: 5
Max nTPM: 3.5
Min nTPM: 0.1
P10809_1005
1.3
P10809_1053
1.7
P10809_1072
0.1
P10809_1082
3.5
P10809_1109
2.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.1
Monaco sample
nTPM
Classical monocyte nTPM: 7.8
Samples: 4
Max nTPM: 9.7
Min nTPM: 5.8
RHH5313_R3680
9.7
RHH5221_R3593
5.8
RHH5250_R3622
8.8
RHH5279_R3651
7.0
Intermediate monocyte nTPM: 9.2
Samples: 4
Max nTPM: 12.2
Min nTPM: 7.1
RHH5314_R3681
7.1
RHH5222_R3594
9.6
RHH5251_R3623
12.2
RHH5280_R3652
7.7
Non-classical monocyte nTPM: 7.2
Samples: 4
Max nTPM: 8.8
Min nTPM: 5.5
RHH5315_R3682
7.1
RHH5223_R3595
5.5
RHH5252_R3624
7.5
RHH5281_R3653
8.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.8
Schmiedel sample id
TPM
Classical monocyte TPM: 13.3
Samples: 91
Max TPM: 18.0
Min TPM: 7.7
MONOCYTES_1
18.0
MONOCYTES_2
17.8
MONOCYTES_3
17.0
MONOCYTES_4
16.5
MONOCYTES_5
16.5
MONOCYTES_6
16.5
MONOCYTES_7
15.9
MONOCYTES_8
15.9
MONOCYTES_9
15.8
MONOCYTES_10
15.8
MONOCYTES_11
15.7
MONOCYTES_12
15.6
MONOCYTES_13
15.6
MONOCYTES_14
15.5
MONOCYTES_15
15.5
MONOCYTES_16
15.4
MONOCYTES_17
15.3
MONOCYTES_18
15.3
MONOCYTES_19
15.2
MONOCYTES_20
15.0
MONOCYTES_21
15.0
MONOCYTES_22
15.0
MONOCYTES_23
14.9
MONOCYTES_24
14.8
MONOCYTES_25
14.7
MONOCYTES_26
14.7
MONOCYTES_27
14.6
MONOCYTES_28
14.6
MONOCYTES_29
14.6
MONOCYTES_30
14.3
MONOCYTES_31
14.1
MONOCYTES_32
14.1
MONOCYTES_33
14.1
MONOCYTES_34
14.0
MONOCYTES_35
13.9
MONOCYTES_36
13.9
MONOCYTES_37
13.8
MONOCYTES_38
13.8
MONOCYTES_39
13.8
MONOCYTES_40
13.8
MONOCYTES_41
13.7
MONOCYTES_42
13.6
MONOCYTES_43
13.6
MONOCYTES_44
13.5
MONOCYTES_45
13.5
MONOCYTES_46
13.5
MONOCYTES_47
13.4
MONOCYTES_48
13.4
MONOCYTES_49
13.4
MONOCYTES_50
13.3
MONOCYTES_51
13.2
MONOCYTES_52
13.1
MONOCYTES_53
13.1
MONOCYTES_54
12.9
MONOCYTES_55
12.9
MONOCYTES_56
12.8
MONOCYTES_57
12.8
MONOCYTES_58
12.7
MONOCYTES_59
12.5
MONOCYTES_60
12.5
MONOCYTES_61
12.5
MONOCYTES_62
12.3
MONOCYTES_63
12.2
MONOCYTES_64
12.2
MONOCYTES_65
12.2
MONOCYTES_66
12.1
MONOCYTES_67
12.1
MONOCYTES_68
12.0
MONOCYTES_69
12.0
MONOCYTES_70
11.9
MONOCYTES_71
11.8
MONOCYTES_72
11.8
MONOCYTES_73
11.7
MONOCYTES_74
11.6
MONOCYTES_75
11.4
MONOCYTES_76
11.4
MONOCYTES_77
11.2
MONOCYTES_78
11.1
MONOCYTES_79
10.9
MONOCYTES_80
10.8
MONOCYTES_81
10.5
MONOCYTES_82
10.4
MONOCYTES_83
10.4
MONOCYTES_84
10.3
MONOCYTES_85
10.1
MONOCYTES_86
10.1
MONOCYTES_87
10.0
MONOCYTES_88
10.0
MONOCYTES_89
9.8
MONOCYTES_90
9.6
MONOCYTES_91
7.7
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Non-classical monocyte TPM: 21.8
Samples: 90
Max TPM: 31.8
Min TPM: 12.5
M2_1
31.8
M2_2
30.8
M2_3
29.0
M2_4
28.6
M2_5
28.2
M2_6
28.1
M2_7
27.8
M2_8
27.7
M2_9
27.5
M2_10
26.5
M2_11
26.4
M2_12
25.9
M2_13
25.8
M2_14
25.8
M2_15
25.7
M2_16
25.6
M2_17
25.3
M2_18
25.2
M2_19
25.2
M2_20
25.1
M2_21
25.0
M2_22
24.7
M2_23
24.0
M2_24
23.9
M2_25
23.9
M2_26
23.8
M2_27
23.6
M2_28
23.4
M2_29
23.2
M2_30
22.9
M2_31
22.7
M2_32
22.7
M2_33
22.6
M2_34
22.5
M2_35
22.2
M2_36
22.2
M2_37
22.1
M2_38
22.0
M2_39
22.0
M2_40
21.9
M2_41
21.9
M2_42
21.8
M2_43
21.7
M2_44
21.7
M2_45
21.6
M2_46
21.3
M2_47
21.3
M2_48
21.1
M2_49
21.1
M2_50
21.0
M2_51
21.0
M2_52
20.9
M2_53
20.8
M2_54
20.6
M2_55
20.6
M2_56
20.6
M2_57
20.1
M2_58
20.0
M2_59
20.0
M2_60
20.0
M2_61
19.9
M2_62
19.9
M2_63
19.8
M2_64
19.7
M2_65
19.4
M2_66
19.4
M2_67
19.3
M2_68
19.2
M2_69
19.2
M2_70
19.1
M2_71
19.1
M2_72
19.0
M2_73
19.0
M2_74
18.8
M2_75
18.6
M2_76
18.5
M2_77
18.1
M2_78
17.9
M2_79
17.7
M2_80
17.6
M2_81
17.4
M2_82
17.1
M2_83
17.1
M2_84
17.0
M2_85
17.0
M2_86
16.1
M2_87
16.0
M2_88
15.8
M2_89
15.7
M2_90
12.5
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