BETA
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:136.6 nTPM
GTEx:11.6 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Macaque:82.4 nTPM
Mouse:56.8 nTPM
Rat:18.7 nTPM
Pig:29.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 6794
Sample Intensity
Hippocampal formation_01
 5375
Hippocampal formation_02
 ND
Hippocampal formation_03
 6985
Hippocampal formation_04
 ND
Hippocampal formation_05
 8909
Hippocampal formation_06
 6603

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 136.6
Sample id Sample description nTPM
Dentate gyrus
nTPM: 26.3
2246 Female, age 85, both hemispheres 33.6
2531 Female, age 67, both hemispheres 30.7
2528 Male, age 74, both hemispheres 27.2
1927 Female, age 91, both hemispheres 25.8
2530 Female, age 94, left hemisphere 23.8
2010 Male, age 76, both hemispheres 16.6
Entorhinal gyrus
nTPM: 102.6
2764 Male, age 80, right hemisphere 132.7
2613 Female, age 94, left hemisphere 128.1
2686 Male, age 75, right hemisphere 116.6
1787 Male, age 76, left hemisphere 93.7
1938 Female, age 85, left hemisphere 91.0
2117 Female, age 91, right hemisphere 53.6
Hippocampus, CA1
nTPM: 25.8
2082 Female, age 91, right hemisphere 39.3
2527 Male, age 74, both hemispheres 29.6
2749 Male, age 80, left hemisphere 22.8
1873 Female, age 85, both hemispheres 21.6
2045 Male, age 76, both hemispheres 15.4
Hippocampus, CA2
nTPM: 47.2
1940 Female, age 85, left hemisphere 85.6
2437 Female, age 94, left hemisphere 72.0
2113 Female, age 91, right hemisphere 47.1
1892 Male, age 76, both hemispheres 34.3
2249 Male, age 74, both hemispheres 22.8
1963 Male, age 80, left hemisphere 21.2
Hippocampus, CA3
nTPM: 26.7
2861 Female, age 67, both hemispheres 35.4
1891 Female, age 85, both hemispheres 32.7
1867 Male, age 76, both hemispheres 26.9
2436 Male, age 74, both hemispheres 23.5
2620 Female, age 94, left hemisphere 22.0
2137 Male, age 80, left hemisphere 19.3
Parahippocampal cortex
nTPM: 110.9
2622 Female, age 67, right hemisphere 163.4
1850 Male, age 80, both hemispheres 139.4
2693 Female, age 94, both hemispheres 131.6
1990 Female, age 91, right hemisphere 118.1
2532 Female, age 72, left hemisphere 117.5
2245 Female, age 91, both hemispheres 103.4
1933 Female, age 85, both hemispheres 102.0
2250 Female, age 67, right hemisphere 81.6
2692 Male, age 74, both hemispheres 81.3
2018 Male, age 76, both hemispheres 70.8
Perirhinal gyrus
nTPM: 136.6
1794 Male, age 80, right hemisphere 185.2
1841 Female, age 85, right hemisphere 155.3
1847 Female, age 91, left hemisphere 124.8
2848 Male, age 76, right hemisphere 120.2
2521 Female, age 94, right hemisphere 97.7
Subiculum
nTPM: 49.5
1977 Female, age 85, both hemispheres 79.4
2619 Male, age 74, both hemispheres 77.0
2438 Female, age 94, left hemisphere 52.8
1901 Male, age 80, both hemispheres 36.0
2729 Female, age 91, right hemisphere 28.0
2042 Male, age 76, both hemispheres 24.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.6
Samples: 255

Max nTPM: 119.4
Min nTPM: 1.0
Std nTPM: 15.1
Median nTPM: 6.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 119.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 111.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 100.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 59.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 58.5
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 57.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 57.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 55.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 54.6
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 52.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 41.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.0
FF:10153-102I9 76 years, female 34.4
FF:10169-103B7 60 years, female 19.7

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi 82.4
Macaque sample Sample description nTPM
Subiculum
nTPM: 23.8
Samples: 1

Max nTPM: 23.8
Min nTPM: 23.8
Sample A 23.8
Entorhinal cortex
nTPM: 82.4
Samples: 2

Max nTPM: 83.7
Min nTPM: 81.0
Sample A 81.0
Sample B 83.7
Hippocampal formation
nTPM: 22.6
Samples: 4

Max nTPM: 25.3
Min nTPM: 16.0
Sample A 24.6
Sample B 16.0
Sample C 24.5
Sample D 25.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 29.9
Pig sample Sample description nTPM
Subiculum
nTPM: 6.8
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.0
Sample A Female 8.2
Sample B Female 6.0
Sample C Male 6.3
Sample D Male 6.5
Dorsal hippocampus
nTPM: 4.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.0
Sample A Female 4.9
Sample B Female 6.4
Sample C Male 4.1
Sample D Male 3.0
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 32.2
Min nTPM: 25.6
Sample A Female 31.9
Sample B Female 32.2
Sample C Male 25.6
Sample D Male 30.0
Ventral hippocampus
nTPM: 10.5
Samples: 4

Max nTPM: 16.6
Min nTPM: 4.2
Sample A Female 14.3
Sample B Female 7.0
Sample C Male 16.6
Sample D Male 4.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 56.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.8
Samples: 4

Max nTPM: 74.2
Min nTPM: 34.4
Sample A 73.4
Sample B 74.2
Sample C 45.2
Sample D 34.4
Hippocampal formation
nTPM: 20.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 13.8
Sample A 24.3
Sample B 20.5
Sample C 13.8
Sample D 24.8

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi 18.7
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 9.8
Sample A 23.6
Sample A 27.0
Sample A 9.8
Sample B 14.2
Ventral hippocampus
nTPM: 8.8
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.4
Sample A 10.0
Sample A 7.4
Sample A 9.0
Sample A 8.7

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