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  • PADI2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:236.1 nTPM
HPA Brain:374.0 nTPM
GTEx:236.1 nTPM
FANTOM5:596.4 Scaled Tags Per Million
Pig:675.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 287.9
2048 Male, age 55, midline 324.9
1981 Female, age 72, midline 318.2
2194 Female, age 79, both hemispheres 288.7
2816 Male, age 47, midline 278.9
2565 Male, age 75, midline 228.8
Cervical spinal cord, dorsal horn
nTPM: 271.0
2173 Female, age 72, unknown 415.6
2296 Male, age 66, both hemispheres 297.6
2069 Male, age 47, both hemispheres 289.0
1877 Male, age 55, unknown 273.4
2721 Male, age 90, both hemispheres 211.5
2297 Male, age 75, both hemispheres 138.8
Cervical spinal cord, ventral horn
nTPM: 374.0
2295 Male, age 66, both hemispheres 464.6
2098 Female, age 72, unknown 453.1
2809 Male, age 90, both hemispheres 382.7
2820 Female, age 79, both hemispheres 328.4
2480 Male, age 75, both hemispheres 310.8
2068 Male, age 55, unknown 304.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 236.1
Samples: 204

Max nTPM: 462.1
Min nTPM: 41.1
Std nTPM: 79.2
Median nTPM: 234.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 462.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 424.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 419.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 416.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 415.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 399.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 392.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 387.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 377.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 370.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 368.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 364.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 361.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 359.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 357.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 357.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 350.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 350.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 348.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 347.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 341.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 338.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 336.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 332.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 326.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 323.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 322.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 321.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 319.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 317.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 316.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 315.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 315.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 314.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 313.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 312.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 312.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 311.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 309.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 309.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 306.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 306.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 304.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 300.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 299.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 296.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 291.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 290.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 289.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 288.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 288.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 285.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 285.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 284.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 283.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 283.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 283.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 278.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 278.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 277.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 276.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 276.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 274.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 269.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 266.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 266.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 266.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 265.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 265.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 264.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 264.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 264.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 262.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 262.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 261.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 260.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 259.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 257.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 256.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 256.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 255.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 253.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 252.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 250.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 248.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 248.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 247.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 247.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 246.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 246.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 243.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 242.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 242.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 242.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 241.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 241.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 238.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 237.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 236.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 236.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 236.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 235.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 234.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 233.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 232.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 230.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 230.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 230.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 228.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 228.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 228.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 228.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 227.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 227.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 222.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 221.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 221.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 221.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 220.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 219.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 218.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 218.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 217.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 216.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 216.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 215.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 214.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 213.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 212.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 209.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 206.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 206.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 205.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 204.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 204.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 200.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 200.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 198.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 198.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 197.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 197.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 196.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 196.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 194.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 194.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 191.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 188.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 187.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 186.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 184.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 183.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 182.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 180.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 179.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 178.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 173.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 173.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 171.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 170.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 167.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 166.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 164.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 164.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 164.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 163.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 163.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 160.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 158.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 157.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 155.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 153.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 151.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 150.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 149.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 148.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 144.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 144.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 142.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 140.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 138.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 137.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 137.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 129.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 128.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 123.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 118.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 116.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 115.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 106.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 102.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 97.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 94.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 94.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 93.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 91.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 89.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 75.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 73.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 41.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

596.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 596.4
FF:10181-103D1 60 years, female 598.6
FF:10159-103A6 76 years, female 594.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

675.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 476.6
Samples: 4

Max nTPM: 516.1
Min nTPM: 414.3
Sample A Female 509.7
Sample B Female 516.1
Sample C Male 414.3
Sample D Male 466.1
Ventral spinal cord
nTPM: 675.3
Samples: 4

Max nTPM: 773.2
Min nTPM: 598.1
Sample A Female 773.2
Sample B Female 690.0
Sample C Male 598.1
Sample D Male 639.7

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