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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:495.2 nTPM
HPA Brain:305.4 nTPM
GTEx:495.2 nTPM
FANTOM5:374.4 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:280.1 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.4
Sample id Sample description nTPM
Amygdala
nTPM: 305.4
1987 Female, age 91, left hemisphere 335.6
2695 Female, age 67, right hemisphere 330.8
2814 Male, age 76, right hemisphere 326.9
2514 Male, age 75, right hemisphere 324.6
2517 Female, age 94, left hemisphere 208.9
Basal amygdala
nTPM: 194.8
2609 Male, age 75, right hemisphere 261.8
1955 Male, age 76, both hemispheres 250.1
2110 Male, age 80, left hemisphere 213.7
2243 Female, age 91, right hemisphere 213.1
2685 Female, age 94, left hemisphere 145.6
2827 Female, age 67, right hemisphere 84.5
Central amygdala
nTPM: 237.0
1905 Male, age 76, both hemispheres 329.5
2515 Male, age 75, right hemisphere 288.9
2701 Female, age 91, right hemisphere 203.2
2239 Male, age 80, left hemisphere 200.9
2826 Female, age 94, left hemisphere 162.3
Corticomedial amygdala
nTPM: 222.8
2428 Male, age 75, right hemisphere 313.9
2242 Female, age 91, right hemisphere 238.1
2829 Male, age 80, left hemisphere 235.3
2429 Female, age 94, left hemisphere 226.5
2240 Male, age 76, both hemispheres 220.8
2535 Female, age 67, right hemisphere 102.2
Lateral amygdala
nTPM: 203.6
1883 Male, age 76, both hemispheres 295.6
2516 Male, age 75, right hemisphere 254.4
2256 Male, age 80, left hemisphere 207.0
2255 Female, age 91, right hemisphere 184.2
2534 Female, age 94, left hemisphere 172.1
2830 Female, age 67, right hemisphere 108.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

495.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 495.2
Samples: 181

Max nTPM: 1052.4
Min nTPM: 264.8
Std nTPM: 139.2
Median nTPM: 465.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1052.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1023.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 910.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 879.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 849.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 847.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 796.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 788.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 760.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 739.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 738.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 728.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 709.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 687.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 681.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 680.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 677.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 675.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 666.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 664.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 650.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 649.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 648.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 642.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 641.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 639.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 637.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 635.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 622.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 621.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 619.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 617.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 615.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 611.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 605.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 600.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 599.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 597.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 592.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 590.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 585.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 579.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 571.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 570.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 569.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 568.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 566.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 565.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 562.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 560.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 554.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 550.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 547.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 545.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 544.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 535.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 534.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 531.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 530.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 529.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 527.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 526.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 523.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 520.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 519.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 517.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 515.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 511.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 510.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 506.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 505.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 503.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 501.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 499.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 498.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 497.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 495.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 490.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 490.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 488.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 485.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 484.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 483.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 481.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 479.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 476.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 476.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 476.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 472.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 469.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 465.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 464.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 463.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 463.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 462.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 459.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 459.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 458.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 457.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 457.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 457.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 456.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 452.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 444.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 443.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 442.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 441.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 440.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 438.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 438.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 436.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 434.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 434.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 433.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 432.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 431.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 425.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 425.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 424.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 424.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 422.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 420.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 419.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 416.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 415.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 415.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 412.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 410.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 410.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 409.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 407.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 404.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 403.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 402.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 402.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 395.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 394.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 394.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 394.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 393.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 389.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 387.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 384.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 384.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 384.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 382.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 381.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 380.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 377.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 377.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 376.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 374.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 374.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 374.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 372.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 369.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 368.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 359.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 354.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 351.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 349.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 348.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 346.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 345.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 338.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 338.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 334.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 334.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 328.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 320.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 316.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 315.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 303.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 296.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 296.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 290.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 282.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 278.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 272.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 270.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 264.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

374.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 374.4
FF:10151-102I7 76 years, female 374.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.4
Pig sample Sample description nTPM
Amygdala
nTPM: 54.4
Samples: 4

Max nTPM: 68.3
Min nTPM: 38.3
Sample A Female 56.5
Sample B Female 68.3
Sample C Male 54.4
Sample D Male 38.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

280.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 280.1
Samples: 4

Max nTPM: 289.0
Min nTPM: 265.1
Sample A Male 265.1
Sample B Male 280.1
Sample C Female 286.2
Sample D Female 289.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 3.9
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 0.4
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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