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  • STMN1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:696.8 nTPM
HPA Brain:316.3 nTPM
GTEx:696.8 nTPM
FANTOM5:165.1 Scaled Tags Per Million
Pig:564.2 nTPM
Mouse:1379.7 nTPM
Allen mouse:15.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.3
Sample id Sample description nTPM
Amygdala
nTPM: 316.3
2814 Male, age 76, right hemisphere 457.7
2514 Male, age 75, right hemisphere 296.3
2695 Female, age 67, right hemisphere 290.7
1987 Female, age 91, left hemisphere 284.0
2517 Female, age 94, left hemisphere 252.9
Basal amygdala
nTPM: 272.7
1955 Male, age 76, both hemispheres 400.6
2110 Male, age 80, left hemisphere 287.0
2243 Female, age 91, right hemisphere 270.8
2685 Female, age 94, left hemisphere 268.0
2609 Male, age 75, right hemisphere 211.3
2827 Female, age 67, right hemisphere 198.6
Central amygdala
nTPM: 287.8
1905 Male, age 76, both hemispheres 368.0
2239 Male, age 80, left hemisphere 362.7
2826 Female, age 94, left hemisphere 287.0
2701 Female, age 91, right hemisphere 227.0
2515 Male, age 75, right hemisphere 194.2
Corticomedial amygdala
nTPM: 289.2
2240 Male, age 76, both hemispheres 435.6
2429 Female, age 94, left hemisphere 329.1
2829 Male, age 80, left hemisphere 312.4
2242 Female, age 91, right hemisphere 236.4
2535 Female, age 67, right hemisphere 228.7
2428 Male, age 75, right hemisphere 193.1
Lateral amygdala
nTPM: 288.5
1883 Male, age 76, both hemispheres 458.9
2534 Female, age 94, left hemisphere 341.6
2256 Male, age 80, left hemisphere 306.9
2516 Male, age 75, right hemisphere 243.9
2255 Female, age 91, right hemisphere 197.2
2830 Female, age 67, right hemisphere 182.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

696.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 696.8
Samples: 181

Max nTPM: 1825.8
Min nTPM: 180.3
Std nTPM: 320.7
Median nTPM: 659.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1825.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1651.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1580.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1557.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1539.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1390.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1381.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1359.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1356.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1337.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1329.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1320.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1304.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1269.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1230.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1201.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1186.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1093.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1086.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1080.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1067.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1061.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1055.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1044.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1030.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1019.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1015.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1005.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1004.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1003.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 990.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 980.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 972.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 967.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 957.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 940.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 922.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 921.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 916.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 908.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 906.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 902.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 896.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 893.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 871.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 870.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 862.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 859.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 851.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 838.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 835.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 822.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 821.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 819.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 816.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 811.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 802.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 793.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 792.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 789.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 784.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 784.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 776.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 767.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 762.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 760.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 751.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 750.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 750.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 749.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 744.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 731.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 726.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 726.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 723.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 715.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 704.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 700.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 696.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 693.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 691.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 690.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 683.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 677.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 677.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 673.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 671.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 666.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 663.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 659.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 659.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 657.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 652.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 652.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 648.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 646.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 638.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 621.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 621.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 618.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 615.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 613.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 611.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 610.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 608.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 600.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 591.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 587.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 570.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 566.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 563.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 558.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 544.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 541.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 532.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 532.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 529.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 527.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 526.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 512.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 509.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 508.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 504.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 496.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 495.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 492.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 491.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 481.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 479.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 464.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 453.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 451.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 448.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 437.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 435.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 435.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 432.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 432.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 430.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 429.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 429.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 424.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 419.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 417.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 413.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 409.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 404.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 404.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 400.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 391.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 386.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 384.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 370.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 363.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 362.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 356.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 353.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 351.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 342.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 340.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 336.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 333.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 332.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 325.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 322.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 320.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 316.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 313.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 302.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 297.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 295.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 290.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 285.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 277.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 272.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 272.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 267.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 252.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 228.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 223.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 180.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

165.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 165.1
FF:10151-102I7 76 years, female 165.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

564.2
Pig sample Sample description nTPM
Amygdala
nTPM: 564.2
Samples: 4

Max nTPM: 778.1
Min nTPM: 445.5
Sample A Female 778.1
Sample B Female 526.0
Sample C Male 507.2
Sample D Male 445.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1379.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 1379.7
Samples: 4

Max nTPM: 1423.1
Min nTPM: 1331.7
Sample A Male 1331.7
Sample B Male 1423.1
Sample C Female 1410.6
Sample D Female 1353.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.1
68632984 Antisense, RP_050125_02_B12, Mouse strain C57BL/6J (56 days, male) 16.0
71016595 Antisense, RP_050725_03_A05, Mouse strain C57BL/6J (56 days, male) 14.1

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