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  • SPP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:225.2 nTPM
HPA Brain:235.5 nTPM
GTEx:225.2 nTPM
FANTOM5:648.8 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:19.8 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.5
Sample id Sample description nTPM
Amygdala
nTPM: 235.5
2695 Female, age 67, right hemisphere 383.8
2814 Male, age 76, right hemisphere 309.6
1987 Female, age 91, left hemisphere 188.0
2517 Female, age 94, left hemisphere 155.3
2514 Male, age 75, right hemisphere 140.7
Basal amygdala
nTPM: 120.9
1955 Male, age 76, both hemispheres 207.6
2110 Male, age 80, left hemisphere 151.8
2685 Female, age 94, left hemisphere 120.1
2243 Female, age 91, right hemisphere 92.7
2827 Female, age 67, right hemisphere 85.3
2609 Male, age 75, right hemisphere 67.7
Central amygdala
nTPM: 129.9
1905 Male, age 76, both hemispheres 202.6
2701 Female, age 91, right hemisphere 148.3
2239 Male, age 80, left hemisphere 127.7
2515 Male, age 75, right hemisphere 102.3
2826 Female, age 94, left hemisphere 68.7
Corticomedial amygdala
nTPM: 115.9
2240 Male, age 76, both hemispheres 205.3
2429 Female, age 94, left hemisphere 153.7
2242 Female, age 91, right hemisphere 100.9
2535 Female, age 67, right hemisphere 83.2
2829 Male, age 80, left hemisphere 81.9
2428 Male, age 75, right hemisphere 70.2
Lateral amygdala
nTPM: 148.3
1883 Male, age 76, both hemispheres 288.1
2256 Male, age 80, left hemisphere 190.6
2255 Female, age 91, right hemisphere 115.2
2534 Female, age 94, left hemisphere 100.7
2830 Female, age 67, right hemisphere 99.1
2516 Male, age 75, right hemisphere 96.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 225.2
Samples: 181

Max nTPM: 2404.4
Min nTPM: 18.3
Std nTPM: 289.3
Median nTPM: 148.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2404.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2225.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1312.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 906.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 876.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 842.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 802.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 716.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 679.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 652.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 606.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 585.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 540.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 534.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 479.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 461.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 460.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 445.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 418.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 404.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 397.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 385.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 383.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 373.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 373.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 371.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 369.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 361.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 355.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 326.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 326.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 321.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 309.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 298.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 293.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 282.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 281.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 279.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 279.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 277.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 274.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 271.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 267.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 266.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 263.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 262.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 259.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 258.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 248.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 240.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 235.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 235.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 228.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 222.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 221.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 221.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 215.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 204.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 203.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 194.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 194.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 192.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 182.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 181.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 180.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 180.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 180.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 179.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 178.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 176.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 173.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 173.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 172.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 171.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 171.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 169.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 166.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 164.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 162.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 162.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 161.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 160.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 160.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 157.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 155.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 150.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 149.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 148.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 148.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 144.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 142.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 137.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 135.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 130.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 129.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 127.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 126.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 125.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 122.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 121.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 120.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 120.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 117.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 115.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 113.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 113.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 112.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 111.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 109.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 107.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 106.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 105.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 103.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 102.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 102.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 101.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 100.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 100.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 97.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 93.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 92.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 90.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 87.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 86.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 84.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 83.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 80.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 79.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 78.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 75.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 75.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 75.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 74.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 74.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 74.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 73.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 73.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 68.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 67.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 66.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 66.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 64.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 63.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 62.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 62.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 59.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 58.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 58.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 50.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 48.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 46.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 45.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 45.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 41.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 40.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 34.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 31.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 27.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 25.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 19.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 18.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

648.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 648.8
FF:10151-102I7 76 years, female 648.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
Pig sample Sample description nTPM
Amygdala
nTPM: 66.8
Samples: 4

Max nTPM: 117.3
Min nTPM: 36.5
Sample A Female 52.1
Sample B Female 117.3
Sample C Male 61.3
Sample D Male 36.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 19.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 14.7
Sample A Male 22.0
Sample B Male 14.7
Sample C Female 16.4
Sample D Female 26.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
513488 Antisense, RP_040810_01_H07, Mouse strain C57BL/6J (56 days, male) 2.5
69015350 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 0.9
75651180 Antisense, RP_060518_01_C06, Mouse strain C57BL/6J (56 days, male) 0.7
70436740 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 0.5

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