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  • SUMMARY

  • TISSUE

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  • SPP1
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:289.4 nTPM
HPA Brain:542.6 nTPM
GTEx:289.4 nTPM
Pig:182.9 nTPM
Mouse:36.2 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

542.6
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 139.9
2226 Male, age 75, left hemisphere 233.3
1961 Female, age 42, unknown 46.5
Dorsomedial nucleus
nTPM: 153.4
2017 Female, age 42, unknown 223.0
1989 Male, age 62, unknown 181.0
2041 Female, age 72, unknown 56.3
Lateral hypothalamic area
nTPM: 354.8
2271 Male, age 75, both hemispheres 711.4
2228 Male, age 66, unknown 312.7
1791 Male, age 80, right hemisphere 230.8
2412 Male, age 62, unknown 164.3
Mammillary body
nTPM: 542.6
1945 Male, age 80, right hemisphere 598.9
1948 Female, age 72, unknown 578.2
2413 Male, age 66, unknown 575.0
1834 Female, age 42, unknown 509.2
1923 Female, age 72, unknown 451.7
Paraventricular nucleus
nTPM: 399.9
2700 Male, age 62, unknown 399.9
Preoptic area
nTPM: 284.4
2414 Female, age 72, unknown 506.5
1861 Female, age 42, unknown 256.4
1907 Male, age 80, right hemisphere 90.3
Supraoptic nucleus
nTPM: 515.8
2043 Male, age 62, unknown 577.7
2835 Female, age 72, unknown 494.1
1894 Female, age 72, unknown 475.7
Ventromedial nucleus
nTPM: 47.5
1982 Female, age 72, unknown 48.1
1822 Female, age 42, unknown 46.9

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.4
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 289.4
Samples: 257

Max nTPM: 1839.3
Min nTPM: 27.6
Std nTPM: 295.7
Median nTPM: 195.0
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 1839.3
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 1678.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 1560.8
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 1343.3
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 1270.8
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 1201.6
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 1112.7
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 1095.0
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 1071.4
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 1041.1
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 1032.0
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 1022.3
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 998.3
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 991.8
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 904.1
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 854.6
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 831.3
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 825.5
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 787.1
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 774.4
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 765.0
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 754.9
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 715.4
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 715.0
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 692.5
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 684.0
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 619.8
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 606.8
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 599.7
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 593.9
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 589.1
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 580.6
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 570.7
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 547.0
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 540.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 536.2
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 516.8
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 513.4
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 508.1
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 501.0
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 497.2
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 492.1
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 488.5
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 467.9
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 464.0
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 444.9
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 442.2
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 433.1
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 429.3
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 428.2
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 424.8
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 416.7
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 413.6
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 406.4
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 403.9
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 392.4
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 374.3
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 365.2
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 363.5
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 362.0
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 352.3
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 346.2
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 343.4
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 343.2
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 341.6
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 339.4
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 326.2
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 317.0
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 308.2
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 307.6
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 306.9
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 299.5
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 299.5
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 292.7
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 291.7
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 280.8
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 280.2
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 279.3
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 278.4
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 278.3
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 273.3
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 270.6
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 270.2
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 269.8
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 268.8
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 264.4
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 262.3
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 262.1
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 260.3
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 259.8
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 258.3
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 257.2
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 255.8
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 251.3
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 251.1
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 250.6
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 248.8
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 248.7
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 248.5
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 245.9
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 239.6
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 239.6
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 238.0
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 236.8
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 236.7
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 234.4
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 231.2
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 230.1
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 228.3
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 226.1
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 225.2
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 225.2
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 225.0
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 222.9
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 222.3
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 217.8
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 215.2
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 214.2
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 211.0
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 207.7
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 205.5
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 202.7
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 202.4
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 201.5
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 199.4
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 196.6
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 196.3
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 196.0
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 195.0
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 194.3
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 189.0
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 188.7
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 188.3
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 188.2
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 185.6
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 185.4
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 183.1
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 182.8
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 182.5
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 180.2
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 179.4
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 178.1
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 177.7
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 176.5
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 174.6
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 173.6
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 173.4
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 173.3
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 172.8
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 172.0
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 169.5
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 165.9
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 165.6
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 158.3
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 157.7
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 156.2
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 153.4
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 150.9
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 150.5
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 147.4
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 147.3
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 145.4
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 145.4
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 144.5
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 142.2
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 137.6
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 137.5
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 136.1
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 135.5
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 134.6
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 133.9
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 132.7
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 124.6
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 123.6
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 122.2
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 117.8
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 116.5
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 116.4
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 115.7
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 114.7
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 114.1
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 114.1
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 113.6
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 111.3
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 110.5
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 110.3
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 109.0
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 108.6
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 108.2
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 106.0
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 105.1
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 104.3
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 103.2
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 100.7
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 99.8
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 99.8
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 97.7
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 96.4
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 96.0
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 95.8
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 95.0
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 94.8
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 94.7
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 93.1
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 92.5
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 89.4
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 88.6
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 87.8
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 87.6
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 85.0
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 84.9
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 80.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 79.2
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 79.1
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 78.7
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 76.6
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 75.8
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 75.8
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 73.7
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 72.9
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 72.1
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 69.8
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 69.7
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 68.6
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 68.0
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 66.4
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 65.7
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 65.6
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 64.4
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 63.4
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 63.4
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 62.6
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 62.0
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 61.0
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 58.9
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 58.2
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 58.0
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 57.2
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 56.8
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 56.5
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 56.1
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 55.5
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 54.5
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 50.6
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 46.9
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 44.9
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 41.9
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 41.6
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 41.0
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 40.2
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 39.0
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 38.1
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 38.0
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 37.8
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 33.7
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 27.7
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 27.6
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.9
Pig sample Sample description nTPM
Hypothalamus
nTPM: 182.9
Samples: 4

Max nTPM: 237.9
Min nTPM: 115.9
Sample A Female 205.3
Sample B Female 237.9
Sample C Male 172.5
Sample D Male 115.9

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.2
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 36.2
Samples: 4

Max nTPM: 61.0
Min nTPM: 9.6
Sample A Male 39.5
Sample B Male 9.6
Sample C Female 34.6
Sample D Female 61.0

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.5
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 1.5
513488 Antisense, RP_040810_01_H07, Mouse strain C57BL/6J (56 days, male) 2.4
69015350 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 1.2
70436740 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 1.1
75651180 Antisense, RP_060518_01_C06, Mouse strain C57BL/6J (56 days, male) 0.9

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