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  • NDUFB3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:160.1 nTPM
HPA Brain:68.9 nTPM
GTEx:160.1 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:79.8 nTPM
Mouse:153.7 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.9
Sample id Sample description nTPM
Amygdala
nTPM: 68.9
2814 Male, age 76, right hemisphere 88.1
2514 Male, age 75, right hemisphere 74.8
2695 Female, age 67, right hemisphere 65.8
1987 Female, age 91, left hemisphere 60.9
2517 Female, age 94, left hemisphere 54.8
Basal amygdala
nTPM: 50.0
1955 Male, age 76, both hemispheres 58.7
2609 Male, age 75, right hemisphere 56.6
2110 Male, age 80, left hemisphere 54.2
2685 Female, age 94, left hemisphere 52.8
2243 Female, age 91, right hemisphere 43.3
2827 Female, age 67, right hemisphere 34.7
Central amygdala
nTPM: 56.0
1905 Male, age 76, both hemispheres 85.3
2826 Female, age 94, left hemisphere 53.8
2515 Male, age 75, right hemisphere 52.8
2239 Male, age 80, left hemisphere 44.0
2701 Female, age 91, right hemisphere 44.0
Corticomedial amygdala
nTPM: 52.3
2829 Male, age 80, left hemisphere 61.0
2240 Male, age 76, both hemispheres 57.2
2429 Female, age 94, left hemisphere 57.2
2428 Male, age 75, right hemisphere 57.0
2242 Female, age 91, right hemisphere 50.0
2535 Female, age 67, right hemisphere 31.1
Lateral amygdala
nTPM: 49.7
1883 Male, age 76, both hemispheres 77.7
2516 Male, age 75, right hemisphere 65.5
2534 Female, age 94, left hemisphere 51.3
2830 Female, age 67, right hemisphere 37.5
2256 Male, age 80, left hemisphere 33.3
2255 Female, age 91, right hemisphere 32.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 160.1
Samples: 181

Max nTPM: 642.6
Min nTPM: 70.6
Std nTPM: 63.6
Median nTPM: 143.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 642.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 383.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 356.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 349.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 336.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 310.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 305.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 292.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 289.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 258.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 255.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 244.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 240.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 237.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 234.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 232.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 232.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 231.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 231.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 227.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 227.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 224.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 221.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 219.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 218.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 215.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 203.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 201.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 198.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 195.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 195.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 194.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 188.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 186.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 186.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 185.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 182.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 181.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 180.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 180.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 180.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 179.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 178.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 177.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 177.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 176.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 174.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 174.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 170.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 169.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 169.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 168.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 166.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 166.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 165.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 164.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 163.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 163.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 163.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 162.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 162.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 161.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 161.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 160.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 159.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 158.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 158.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 157.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 155.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 155.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 155.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 154.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 152.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 152.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 152.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 149.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 148.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 148.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 147.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 146.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 146.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 146.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 145.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 144.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 144.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 143.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 143.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 143.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 142.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 142.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 141.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 140.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 140.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 140.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 140.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 139.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 139.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 138.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 138.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 138.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 137.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 136.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 136.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 135.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 135.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 135.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 135.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 134.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 134.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 133.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 133.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 132.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 132.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 131.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 131.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 130.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 130.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 129.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 129.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 128.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 126.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 124.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 124.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 123.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 123.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 123.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 121.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 120.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 118.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 118.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 117.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 117.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 117.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 116.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 114.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 113.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 112.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 111.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 110.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 109.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 109.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 109.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 109.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 106.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 105.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 105.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 105.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 105.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 104.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 102.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 99.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 95.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 92.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 70.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.4
FF:10151-102I7 76 years, female 29.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.8
Pig sample Sample description nTPM
Amygdala
nTPM: 79.9
Samples: 4

Max nTPM: 93.2
Min nTPM: 69.7
Sample A Female 93.2
Sample B Female 86.4
Sample C Male 69.7
Sample D Male 70.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 153.7
Samples: 4

Max nTPM: 154.7
Min nTPM: 152.0
Sample A Male 153.8
Sample B Male 152.0
Sample C Female 154.7
Sample D Female 154.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
70473927 Antisense, RP_050614_04_E11, Mouse strain C57BL/6J (56 days, male) 1.9

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