MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:172.3 nTPM
HPA Brain:78.8 nTPM
GTEx:172.3 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:123.8 nTPM
Mouse:175.6 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.6
2019 Male, age 18, unknown 83.1
2411 Female, age 72, unknown 72.3
1827 Male, age 72, unknown 63.6
2219 Male, age 76, both hemispheres 61.3
1870 Female, age 42, unknown 61.0
1833 Male, age 53, unknown 56.2
2666 Male, age 74, left hemisphere 54.6
1830 Male, age 51, unknown 51.0
2828 Female, age 72, unknown 47.8
2586 Male, age 75, left hemisphere 45.4
Dorsal raphe nucleus
nTPM: 70.9
2298 Female, age 72, unknown 87.8
1828 Male, age 53, unknown 74.5
2750 Male, age 76, both hemispheres 66.5
2047 Male, age 72, unknown 64.0
2016 Female, age 72, unknown 61.8
Inferior colliculus
nTPM: 64.1
2097 Female, age 72, unknown 81.4
1890 Male, age 53, unknown 74.3
1848 Female, age 42, unknown 53.3
2849 Male, age 72, unknown 47.4
Median raphe nucleus
nTPM: 65.7
2220 Male, age 76, midline 65.7
Periaquaductal grey, anterior
nTPM: 59.8
1947 Male, age 18, unknown 62.9
1795 Male, age 51, unknown 59.5
2502 Female, age 75, unknown 56.9
Periaquaductal grey, dorsal
nTPM: 55.5
2850 Male, age 76, both hemispheres 61.0
2464 Female, age 72, unknown 55.5
1840 Male, age 53, unknown 53.8
1831 Male, age 72, unknown 51.9
Periaquaductal grey, lateral
nTPM: 54.4
2272 Male, age 74, both hemispheres 59.3
2053 Male, age 18, unknown 54.6
2140 Male, age 76, both hemispheres 49.5
Pretectal area
nTPM: 75.7
2007 Male, age 72, unknown 95.5
2667 Female, age 75, unknown 94.1
1816 Male, age 51, unknown 92.4
1817 Female, age 42, unknown 90.3
1944 Female, age 72, unknown 83.2
1815 Male, age 53, unknown 80.6
2224 Female, age 72, unknown 69.3
2273 Male, age 74, both hemispheres 68.8
2316 Male, age 76, right hemisphere 59.0
2825 Male, age 18, unknown 50.5
2407 Male, age 75, both hemispheres 48.8
Red nucleus
nTPM: 67.2
1821 Female, age 72, unknown 107.3
2823 Male, age 76, right hemisphere 76.1
1954 Female, age 42, unknown 72.7
1865 Male, age 51, unknown 71.7
2785 Male, age 18, unknown 67.6
1904 Male, age 53, unknown 65.6
2503 Female, age 72, unknown 63.7
2769 Male, age 72, unknown 63.7
2227 Male, age 72, unknown 62.4
2725 Female, age 75, unknown 59.6
2588 Male, age 74, left hemisphere 50.9
2584 Male, age 75, left hemisphere 45.7
Substantia nigra
nTPM: 78.8
1916 Female, age 42, unknown 104.9
2241 Male, age 72, unknown 102.9
1851 Male, age 51, unknown 87.5
2409 Female, age 72, unknown 86.9
1889 Female, age 72, unknown 86.4
1941 Male, age 53, unknown 77.2
2699 Male, age 18, unknown 66.6
2590 Female, age 75, unknown 65.9
2665 Male, age 74, both hemispheres 60.5
2583 Male, age 75, right hemisphere 49.1
Superior colliculus
nTPM: 61.1
2087 Female, age 72, unknown 75.1
2587 Male, age 74, left hemisphere 69.2
1895 Male, age 76, right hemisphere 67.7
2261 Male, age 18, unknown 66.2
2668 Female, age 75, unknown 64.1
1796 Male, age 53, unknown 58.3
1913 Female, age 42, unknown 56.4
1995 Male, age 72, unknown 54.1
1839 Male, age 51, unknown 53.4
2664 Male, age 75, both hemispheres 46.1
Ventral tegmental area
nTPM: 68.8
1915 Female, age 42, unknown 83.4
2218 Male, age 76, both hemispheres 77.5
2410 Female, age 72, unknown 77.2
2223 Female, age 72, unknown 62.5
1942 Male, age 51, unknown 57.2
2021 Male, age 53, unknown 55.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 172.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.3
Samples: 183

Max nTPM: 330.5
Min nTPM: 92.6
Std nTPM: 44.0
Median nTPM: 164.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 330.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 319.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 318.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 310.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 295.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 285.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 278.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 263.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 260.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 257.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 253.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 123.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 102.1
Samples: 4

Max nTPM: 135.0
Min nTPM: 81.3
Sample A Female 135.0
Sample B Female 81.3
Sample C Male 107.5
Sample D Male 84.4
Midbrain
nTPM: 119.8
Samples: 4

Max nTPM: 127.8
Min nTPM: 111.9
Sample A Female 127.8
Sample B Female 120.9
Sample C Male 111.9
Sample D Male 118.7
Periaqueductal gray
nTPM: 98.6
Samples: 3

Max nTPM: 107.9
Min nTPM: 91.1
Sample B Female 96.8
Sample C Male 107.9
Sample D Male 91.1
Superior colliculi
nTPM: 123.8
Samples: 4

Max nTPM: 138.8
Min nTPM: 90.8
Sample A Female 137.2
Sample B Female 90.8
Sample C Male 138.8
Sample D Male 128.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 175.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 175.6
Samples: 4

Max nTPM: 183.2
Min nTPM: 167.6
Sample A Male 167.6
Sample B Male 183.2
Sample C Female 168.9
Sample D Female 182.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70473927 Antisense, RP_050614_04_E11, Mouse strain C57BL/6J (56 days, male) 1.0

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