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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:135.4 nTPM
HPA Brain:56.6 nTPM
GTEx:135.4 nTPM
FANTOM5:74.6 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:257.9 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.6
Sample id Sample description nTPM
Amygdala
nTPM: 56.6
2814 Male, age 76, right hemisphere 75.5
2514 Male, age 75, right hemisphere 55.6
2517 Female, age 94, left hemisphere 51.6
2695 Female, age 67, right hemisphere 51.2
1987 Female, age 91, left hemisphere 49.0
Basal amygdala
nTPM: 46.1
2609 Male, age 75, right hemisphere 56.5
2243 Female, age 91, right hemisphere 52.1
1955 Male, age 76, both hemispheres 49.2
2110 Male, age 80, left hemisphere 46.9
2685 Female, age 94, left hemisphere 43.8
2827 Female, age 67, right hemisphere 27.9
Central amygdala
nTPM: 49.0
1905 Male, age 76, both hemispheres 69.6
2826 Female, age 94, left hemisphere 48.0
2515 Male, age 75, right hemisphere 44.5
2239 Male, age 80, left hemisphere 44.1
2701 Female, age 91, right hemisphere 38.7
Corticomedial amygdala
nTPM: 47.3
2829 Male, age 80, left hemisphere 59.2
2428 Male, age 75, right hemisphere 52.1
2242 Female, age 91, right hemisphere 49.8
2240 Male, age 76, both hemispheres 45.6
2429 Female, age 94, left hemisphere 45.3
2535 Female, age 67, right hemisphere 31.5
Lateral amygdala
nTPM: 45.6
1883 Male, age 76, both hemispheres 67.3
2516 Male, age 75, right hemisphere 58.3
2534 Female, age 94, left hemisphere 50.9
2830 Female, age 67, right hemisphere 35.0
2255 Female, age 91, right hemisphere 33.8
2256 Male, age 80, left hemisphere 28.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 135.4
Samples: 181

Max nTPM: 397.4
Min nTPM: 71.5
Std nTPM: 46.3
Median nTPM: 124.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 397.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 326.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 324.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 283.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 261.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 240.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 223.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 219.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 216.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 211.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 204.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 204.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 203.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 203.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 200.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 196.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 193.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 189.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 188.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 188.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 183.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 174.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 173.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 171.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 170.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 169.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 166.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 166.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 165.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 163.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 161.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 161.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 160.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 159.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 159.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 159.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 158.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 158.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 156.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 156.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 155.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 154.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 154.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 153.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 153.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 153.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 153.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 152.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 152.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 151.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 150.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 145.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 144.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 143.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 143.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 143.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 142.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 142.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 142.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 141.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 141.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 141.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 140.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 140.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 139.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 138.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 136.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 136.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 136.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 135.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 134.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 133.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 133.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 131.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 130.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 130.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 130.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 129.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 128.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 128.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 127.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 127.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 126.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 124.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 123.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 123.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 122.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 122.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 121.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 121.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 121.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 121.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 121.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 120.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 120.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 120.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 118.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 118.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 118.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 117.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 117.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 116.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 116.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 116.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 115.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 115.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 115.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 111.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 111.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 110.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 109.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 108.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 105.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 105.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 104.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 104.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 104.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 104.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 103.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 103.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 103.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 102.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 101.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 101.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 100.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 100.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 100.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 99.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 98.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 98.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 97.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 97.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 96.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 95.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 95.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 94.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 94.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 93.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 93.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 93.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 92.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 92.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 86.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 86.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 82.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 80.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 79.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 77.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 77.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 74.6
FF:10151-102I7 76 years, female 74.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.7
Pig sample Sample description nTPM
Amygdala
nTPM: 34.7
Samples: 4

Max nTPM: 50.6
Min nTPM: 28.0
Sample A Female 50.6
Sample B Female 30.9
Sample C Male 29.3
Sample D Male 28.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 258.0
Samples: 4

Max nTPM: 268.5
Min nTPM: 249.3
Sample A Male 249.3
Sample B Male 261.3
Sample C Female 268.5
Sample D Female 252.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
386020 Antisense, RP_040804_01_A08, Mouse strain C57BL/6J (56 days, male) 1.2

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