MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.6 nTPM
HPA Brain:57.5 nTPM
GTEx:120.6 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:216.9 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.2
2019 Male, age 18, unknown 63.0
1827 Male, age 72, unknown 52.7
2586 Male, age 75, left hemisphere 48.2
2411 Female, age 72, unknown 47.4
1870 Female, age 42, unknown 45.2
1833 Male, age 53, unknown 43.1
2828 Female, age 72, unknown 43.0
2219 Male, age 76, both hemispheres 42.0
2666 Male, age 74, left hemisphere 38.9
1830 Male, age 51, unknown 38.2
Dorsal raphe nucleus
nTPM: 50.0
2298 Female, age 72, unknown 61.4
1828 Male, age 53, unknown 52.9
2047 Male, age 72, unknown 49.1
2750 Male, age 76, both hemispheres 44.9
2016 Female, age 72, unknown 41.5
Inferior colliculus
nTPM: 55.3
2097 Female, age 72, unknown 67.5
1890 Male, age 53, unknown 59.6
1848 Female, age 42, unknown 51.3
2849 Male, age 72, unknown 43.0
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Periaquaductal grey, anterior
nTPM: 47.8
1795 Male, age 51, unknown 50.6
1947 Male, age 18, unknown 49.7
2502 Female, age 75, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 42.5
1840 Male, age 53, unknown 45.8
2464 Female, age 72, unknown 42.7
1831 Male, age 72, unknown 42.3
2850 Male, age 76, both hemispheres 39.2
Periaquaductal grey, lateral
nTPM: 42.2
2272 Male, age 74, both hemispheres 48.2
2053 Male, age 18, unknown 40.0
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 57.5
2007 Male, age 72, unknown 77.5
1817 Female, age 42, unknown 75.4
1944 Female, age 72, unknown 74.6
1816 Male, age 51, unknown 73.1
2667 Female, age 75, unknown 61.0
1815 Male, age 53, unknown 56.6
2273 Male, age 74, both hemispheres 52.9
2224 Female, age 72, unknown 48.2
2316 Male, age 76, right hemisphere 40.7
2825 Male, age 18, unknown 39.7
2407 Male, age 75, both hemispheres 32.4
Red nucleus
nTPM: 49.1
1821 Female, age 72, unknown 63.5
2785 Male, age 18, unknown 58.0
2725 Female, age 75, unknown 56.1
2823 Male, age 76, right hemisphere 49.4
1865 Male, age 51, unknown 49.0
1954 Female, age 42, unknown 48.8
2769 Male, age 72, unknown 47.5
2503 Female, age 72, unknown 47.0
2227 Male, age 72, unknown 46.6
1904 Male, age 53, unknown 45.0
2588 Male, age 74, left hemisphere 40.3
2584 Male, age 75, left hemisphere 37.5
Substantia nigra
nTPM: 54.6
1916 Female, age 42, unknown 71.1
1889 Female, age 72, unknown 70.5
1851 Male, age 51, unknown 59.7
1941 Male, age 53, unknown 58.0
2665 Male, age 74, both hemispheres 53.4
2241 Male, age 72, unknown 53.2
2409 Female, age 72, unknown 50.6
2699 Male, age 18, unknown 44.6
2590 Female, age 75, unknown 44.2
2583 Male, age 75, right hemisphere 40.7
Superior colliculus
nTPM: 47.3
2087 Female, age 72, unknown 62.3
1895 Male, age 76, right hemisphere 55.2
1796 Male, age 53, unknown 51.8
2587 Male, age 74, left hemisphere 51.1
2668 Female, age 75, unknown 49.3
2261 Male, age 18, unknown 47.8
1913 Female, age 42, unknown 41.2
1839 Male, age 51, unknown 40.8
1995 Male, age 72, unknown 39.9
2664 Male, age 75, both hemispheres 33.5
Ventral tegmental area
nTPM: 48.6
2410 Female, age 72, unknown 62.9
1915 Female, age 42, unknown 55.1
2218 Male, age 76, both hemispheres 52.9
2223 Female, age 72, unknown 44.0
1942 Male, age 51, unknown 41.4
2021 Male, age 53, unknown 35.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 120.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.6
Samples: 183

Max nTPM: 229.5
Min nTPM: 54.4
Std nTPM: 29.2
Median nTPM: 116.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 229.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 208.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 207.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 200.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 185.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 182.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 175.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 175.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 174.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 174.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 172.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.6
FF:10158-103A5 76 years, female 47.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.7
Samples: 4

Max nTPM: 62.4
Min nTPM: 29.3
Sample A Female 62.4
Sample B Female 36.6
Sample C Male 38.4
Sample D Male 29.3
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 56.6
Min nTPM: 41.5
Sample A Female 56.6
Sample B Female 41.5
Sample C Male 53.6
Sample D Male 46.8
Periaqueductal gray
nTPM: 36.5
Samples: 3

Max nTPM: 39.2
Min nTPM: 32.8
Sample B Female 37.6
Sample C Male 39.2
Sample D Male 32.8
Superior colliculi
nTPM: 59.9
Samples: 4

Max nTPM: 69.4
Min nTPM: 44.7
Sample A Female 65.1
Sample B Female 69.4
Sample C Male 60.5
Sample D Male 44.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 216.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 216.9
Samples: 4

Max nTPM: 240.1
Min nTPM: 196.4
Sample A Male 240.1
Sample B Male 208.1
Sample C Female 196.4
Sample D Female 223.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
386020 Antisense, RP_040804_01_A08, Mouse strain C57BL/6J (56 days, male) 1.7

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