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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:37.0 nTPM
HPA Brain:30.2 nTPM
GTEx:37.0 nTPM
FANTOM5:32.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.2
Sample id Sample description nTPM
Amygdala
nTPM: 28.5
2814 Male, age 76, right hemisphere 30.6
2517 Female, age 94, left hemisphere 29.0
1987 Female, age 91, left hemisphere 28.6
2695 Female, age 67, right hemisphere 27.3
2514 Male, age 75, right hemisphere 26.9
Basal amygdala
nTPM: 28.6
1955 Male, age 76, both hemispheres 34.7
2827 Female, age 67, right hemisphere 30.3
2243 Female, age 91, right hemisphere 30.2
2685 Female, age 94, left hemisphere 28.2
2609 Male, age 75, right hemisphere 26.3
2110 Male, age 80, left hemisphere 21.9
Central amygdala
nTPM: 30.2
2701 Female, age 91, right hemisphere 41.5
1905 Male, age 76, both hemispheres 35.3
2239 Male, age 80, left hemisphere 29.9
2515 Male, age 75, right hemisphere 22.9
2826 Female, age 94, left hemisphere 21.8
Corticomedial amygdala
nTPM: 28.8
2242 Female, age 91, right hemisphere 34.1
2240 Male, age 76, both hemispheres 30.7
2429 Female, age 94, left hemisphere 30.3
2535 Female, age 67, right hemisphere 27.2
2829 Male, age 80, left hemisphere 26.1
2428 Male, age 75, right hemisphere 24.5
Lateral amygdala
nTPM: 28.0
2830 Female, age 67, right hemisphere 33.4
2255 Female, age 91, right hemisphere 31.3
1883 Male, age 76, both hemispheres 29.4
2534 Female, age 94, left hemisphere 26.1
2516 Male, age 75, right hemisphere 25.3
2256 Male, age 80, left hemisphere 22.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.0
Samples: 181

Max nTPM: 79.8
Min nTPM: 14.6
Std nTPM: 11.7
Median nTPM: 36.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 79.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 77.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 74.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 71.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 62.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 62.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 61.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 59.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 57.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 54.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 53.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 52.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 52.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 51.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 51.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 50.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 50.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 50.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 50.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 49.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 49.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 49.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 49.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 48.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 48.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 47.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 47.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 46.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 46.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 46.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 46.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 46.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 45.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 45.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 45.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 45.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 45.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 44.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 44.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 44.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 43.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 42.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 42.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 42.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 42.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 42.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 41.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 41.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 41.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 41.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 41.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 40.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 40.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 40.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 40.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 40.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 40.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 40.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 39.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 39.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 39.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 39.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 39.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 39.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 38.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 38.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 38.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 38.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 38.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 38.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 37.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 37.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 37.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 37.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 37.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 37.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 36.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 36.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 36.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 36.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 36.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 36.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 35.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 35.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 35.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 35.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 35.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 35.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 35.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 34.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 34.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 34.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 34.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 34.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 34.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 34.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 33.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 33.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 33.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 33.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 33.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 33.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 33.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 32.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 32.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 32.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 32.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 31.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 31.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 31.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 31.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 31.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 31.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 30.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 30.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 30.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 30.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 30.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 30.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 29.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 29.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 29.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 28.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 28.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 28.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 28.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 28.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 27.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 27.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 27.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 27.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 26.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 26.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 26.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 25.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 25.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 25.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 25.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 25.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 24.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 24.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 24.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 24.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 24.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 23.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 23.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 23.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 23.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 22.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 22.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 21.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 21.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 20.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 20.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 20.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 18.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 17.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 16.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 16.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 15.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 14.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 14.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 14.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 32.4
FF:10151-102I7 76 years, female 32.4

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