MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:39.2 nTPM
GTEx:33.9 nTPM
FANTOM5:55.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.5
1833 Male, age 53, unknown 35.0
2219 Male, age 76, both hemispheres 34.9
2666 Male, age 74, left hemisphere 34.3
1827 Male, age 72, unknown 34.2
2411 Female, age 72, unknown 33.2
1870 Female, age 42, unknown 32.6
1830 Male, age 51, unknown 32.3
2019 Male, age 18, unknown 31.1
2828 Female, age 72, unknown 26.3
2586 Male, age 75, left hemisphere 21.3
Dorsal raphe nucleus
nTPM: 31.2
2750 Male, age 76, both hemispheres 37.7
1828 Male, age 53, unknown 31.2
2047 Male, age 72, unknown 30.0
2298 Female, age 72, unknown 28.7
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 32.3
1890 Male, age 53, unknown 34.2
2849 Male, age 72, unknown 33.2
2097 Female, age 72, unknown 31.1
1848 Female, age 42, unknown 30.7
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Periaquaductal grey, anterior
nTPM: 29.1
1795 Male, age 51, unknown 31.1
1947 Male, age 18, unknown 30.0
2502 Female, age 75, unknown 26.3
Periaquaductal grey, dorsal
nTPM: 32.1
1831 Male, age 72, unknown 34.0
2464 Female, age 72, unknown 33.2
2850 Male, age 76, both hemispheres 33.1
1840 Male, age 53, unknown 28.2
Periaquaductal grey, lateral
nTPM: 34.4
2272 Male, age 74, both hemispheres 39.4
2053 Male, age 18, unknown 32.4
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 35.0
2273 Male, age 74, both hemispheres 42.0
2667 Female, age 75, unknown 40.3
1816 Male, age 51, unknown 36.1
1815 Male, age 53, unknown 36.0
2825 Male, age 18, unknown 35.9
1944 Female, age 72, unknown 35.4
2224 Female, age 72, unknown 33.9
2007 Male, age 72, unknown 33.8
2407 Male, age 75, both hemispheres 33.1
2316 Male, age 76, right hemisphere 30.0
1817 Female, age 42, unknown 28.7
Red nucleus
nTPM: 35.2
2823 Male, age 76, right hemisphere 44.9
2725 Female, age 75, unknown 37.3
1904 Male, age 53, unknown 37.1
2503 Female, age 72, unknown 36.4
2227 Male, age 72, unknown 35.8
1865 Male, age 51, unknown 35.2
2588 Male, age 74, left hemisphere 34.8
1821 Female, age 72, unknown 32.9
2769 Male, age 72, unknown 32.8
1954 Female, age 42, unknown 32.6
2584 Male, age 75, left hemisphere 31.7
2785 Male, age 18, unknown 30.9
Substantia nigra
nTPM: 31.8
1941 Male, age 53, unknown 36.0
2409 Female, age 72, unknown 33.7
2699 Male, age 18, unknown 33.2
1916 Female, age 42, unknown 32.8
2583 Male, age 75, right hemisphere 32.8
1889 Female, age 72, unknown 32.7
2241 Male, age 72, unknown 32.4
2590 Female, age 75, unknown 30.4
1851 Male, age 51, unknown 27.4
2665 Male, age 74, both hemispheres 26.0
Superior colliculus
nTPM: 31.0
1895 Male, age 76, right hemisphere 40.4
1913 Female, age 42, unknown 37.2
2587 Male, age 74, left hemisphere 33.8
2261 Male, age 18, unknown 32.9
2087 Female, age 72, unknown 32.3
1839 Male, age 51, unknown 28.6
2668 Female, age 75, unknown 28.4
1995 Male, age 72, unknown 27.8
1796 Male, age 53, unknown 27.7
2664 Male, age 75, both hemispheres 21.0
Ventral tegmental area
nTPM: 30.3
2218 Male, age 76, both hemispheres 33.6
2223 Female, age 72, unknown 33.4
1942 Male, age 51, unknown 32.2
1915 Female, age 42, unknown 29.5
2410 Female, age 72, unknown 28.0
2021 Male, age 53, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.9
Samples: 183

Max nTPM: 76.0
Min nTPM: 11.1
Std nTPM: 13.0
Median nTPM: 31.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 76.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 75.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 67.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 67.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 61.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 59.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.1
FF:10158-103A5 76 years, female 55.1

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