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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • NPC2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:128.1 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:46.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA000835Antibody CAB032888
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 128.1
Samples: 300

Max nTPM: 341.0
Min nTPM: 55.4
Std nTPM: 40.8
Median nTPM: 123.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 341.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 287.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 258.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 253.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 247.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 243.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 235.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 233.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 223.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 218.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 215.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 209.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 203.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 197.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 194.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 193.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 191.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 190.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 189.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 187.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 187.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 186.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 186.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 184.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 182.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 180.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 179.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 179.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 178.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 178.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 178.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 176.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 174.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 174.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 173.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 171.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 171.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 171.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 170.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 170.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 169.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 169.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 168.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 167.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 167.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 167.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 166.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 166.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 166.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 166.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 166.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 165.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 165.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 165.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 162.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 162.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 162.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 162.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 161.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 161.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 161.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 160.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 157.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 157.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 156.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 156.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 156.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 155.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 155.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 152.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 151.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 151.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 150.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 150.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 147.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 147.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 147.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 147.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 147.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 146.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 146.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 146.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 145.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 145.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 144.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 143.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 143.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 143.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 143.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 142.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 142.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 142.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 142.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 142.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 142.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 141.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 140.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 140.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 140.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 139.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 139.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 139.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 138.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 138.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 137.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 137.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 137.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 137.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 136.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 136.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 135.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 135.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 135.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 134.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 134.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 134.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 134.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 133.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 132.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 132.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 132.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 132.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 132.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 131.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 131.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 131.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 130.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 130.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 130.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 130.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 129.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 129.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 129.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 129.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 129.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 128.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 128.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 127.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 127.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 127.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 125.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 125.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 125.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 124.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 124.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 124.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 124.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 124.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 123.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 123.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 122.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 122.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 122.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 122.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 121.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 121.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 120.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 120.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 119.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 119.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 118.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 118.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 118.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 118.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 118.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 117.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 116.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 116.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 116.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 116.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 115.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 113.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 113.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 113.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 113.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 112.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 111.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 111.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 110.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 110.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 110.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 109.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 108.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 108.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 108.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 108.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 108.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 108.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 107.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 107.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 107.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 107.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 107.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 107.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 107.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 106.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 106.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 106.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 106.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 106.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 106.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 106.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 106.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 105.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 105.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 104.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 104.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 103.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 103.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 103.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 102.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 102.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 101.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 101.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 101.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 101.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 100.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 100.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 100.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 98.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 98.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 98.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 97.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 97.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 97.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 97.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 97.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 96.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 95.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 95.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 94.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 94.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 93.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 93.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 92.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 92.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 92.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 92.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 92.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 90.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 90.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 90.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 90.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 89.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 89.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 89.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 88.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 88.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 88.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 88.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 88.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 87.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 87.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 86.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 86.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 86.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 85.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 85.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 84.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 83.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 82.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 82.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 81.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 80.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 80.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 80.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 79.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 79.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 79.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 79.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 79.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 78.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 76.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 74.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 73.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 73.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 73.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 72.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 71.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 70.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 69.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 69.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 69.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 68.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 68.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 67.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 56.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.8
FF:10164-103B2 76 years, female 78.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.7
Pig sample Sample description nTPM
Caudate
nTPM: 46.7
Samples: 4

Max nTPM: 56.0
Min nTPM: 37.5
Sample A Female 56.0
Sample B Female 45.0
Sample C Male 48.2
Sample D Male 37.5

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