MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.8 nTPM
HPA Brain:126.1 nTPM
GTEx:216.8 nTPM
FANTOM5:200.1 Scaled Tags Per Million
Pig:99.4 nTPM
Mouse:57.3 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.7
1870 Female, age 42, unknown 133.3
2828 Female, age 72, unknown 123.9
1830 Male, age 51, unknown 118.8
1833 Male, age 53, unknown 116.4
2019 Male, age 18, unknown 108.8
2411 Female, age 72, unknown 108.5
2666 Male, age 74, left hemisphere 94.5
1827 Male, age 72, unknown 93.4
2586 Male, age 75, left hemisphere 65.1
2219 Male, age 76, both hemispheres 64.0
Dorsal raphe nucleus
nTPM: 123.6
2298 Female, age 72, unknown 143.3
2016 Female, age 72, unknown 133.4
2750 Male, age 76, both hemispheres 115.5
2047 Male, age 72, unknown 114.2
1828 Male, age 53, unknown 111.5
Inferior colliculus
nTPM: 89.8
2097 Female, age 72, unknown 94.1
1848 Female, age 42, unknown 91.5
1890 Male, age 53, unknown 87.0
2849 Male, age 72, unknown 86.7
Median raphe nucleus
nTPM: 97.3
2220 Male, age 76, midline 97.3
Periaquaductal grey, anterior
nTPM: 89.5
2502 Female, age 75, unknown 94.5
1947 Male, age 18, unknown 87.5
1795 Male, age 51, unknown 86.5
Periaquaductal grey, dorsal
nTPM: 108.3
2850 Male, age 76, both hemispheres 139.9
1831 Male, age 72, unknown 105.3
1840 Male, age 53, unknown 94.0
2464 Female, age 72, unknown 94.0
Periaquaductal grey, lateral
nTPM: 126.1
2272 Male, age 74, both hemispheres 131.8
2053 Male, age 18, unknown 125.6
2140 Male, age 76, both hemispheres 120.9
Pretectal area
nTPM: 100.7
2273 Male, age 74, both hemispheres 123.9
2224 Female, age 72, unknown 116.9
2316 Male, age 76, right hemisphere 113.9
2407 Male, age 75, both hemispheres 102.9
2825 Male, age 18, unknown 102.1
1817 Female, age 42, unknown 100.0
1815 Male, age 53, unknown 98.7
2007 Male, age 72, unknown 92.6
2667 Female, age 75, unknown 91.7
1944 Female, age 72, unknown 88.4
1816 Male, age 51, unknown 76.0
Red nucleus
nTPM: 120.1
1865 Male, age 51, unknown 148.6
1821 Female, age 72, unknown 146.7
1904 Male, age 53, unknown 138.0
2823 Male, age 76, right hemisphere 135.6
2769 Male, age 72, unknown 126.0
1954 Female, age 42, unknown 124.6
2503 Female, age 72, unknown 121.7
2725 Female, age 75, unknown 121.2
2227 Male, age 72, unknown 119.9
2785 Male, age 18, unknown 112.0
2584 Male, age 75, left hemisphere 79.4
2588 Male, age 74, left hemisphere 66.9
Substantia nigra
nTPM: 109.8
2590 Female, age 75, unknown 137.9
2699 Male, age 18, unknown 128.2
1851 Male, age 51, unknown 115.5
2583 Male, age 75, right hemisphere 108.8
1941 Male, age 53, unknown 107.0
1916 Female, age 42, unknown 106.0
1889 Female, age 72, unknown 100.1
2409 Female, age 72, unknown 98.9
2241 Male, age 72, unknown 98.0
2665 Male, age 74, both hemispheres 98.0
Superior colliculus
nTPM: 101.5
2587 Male, age 74, left hemisphere 139.0
1995 Male, age 72, unknown 131.6
1913 Female, age 42, unknown 129.4
1839 Male, age 51, unknown 99.3
1895 Male, age 76, right hemisphere 92.5
1796 Male, age 53, unknown 90.1
2664 Male, age 75, both hemispheres 89.8
2087 Female, age 72, unknown 83.8
2261 Male, age 18, unknown 81.5
2668 Female, age 75, unknown 78.3
Ventral tegmental area
nTPM: 120.1
2410 Female, age 72, unknown 134.1
2223 Female, age 72, unknown 131.0
2021 Male, age 53, unknown 128.3
1915 Female, age 42, unknown 118.3
2218 Male, age 76, both hemispheres 107.3
1942 Male, age 51, unknown 101.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 216.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.8
Samples: 183

Max nTPM: 487.8
Min nTPM: 42.4
Std nTPM: 73.4
Median nTPM: 200.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 487.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 453.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 435.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 422.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 400.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 388.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 379.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 376.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 369.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 369.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 359.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 200.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.1
FF:10158-103A5 76 years, female 200.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 99.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.4
Samples: 4

Max nTPM: 137.5
Min nTPM: 78.4
Sample A Female 137.5
Sample B Female 90.9
Sample C Male 90.9
Sample D Male 78.4
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 178.7
Min nTPM: 42.0
Sample A Female 178.7
Sample B Female 80.9
Sample C Male 49.6
Sample D Male 42.0
Periaqueductal gray
nTPM: 69.9
Samples: 3

Max nTPM: 79.7
Min nTPM: 55.7
Sample B Female 74.3
Sample C Male 79.7
Sample D Male 55.7
Superior colliculi
nTPM: 72.5
Samples: 4

Max nTPM: 105.2
Min nTPM: 56.4
Sample A Female 105.2
Sample B Female 67.0
Sample C Male 61.4
Sample D Male 56.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 59.9
Min nTPM: 55.1
Sample A Male 59.9
Sample B Male 55.1
Sample C Female 56.6
Sample D Female 57.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
75774115 Antisense, RP_060530_01_B11, Mouse strain C57BL/6J (56 days, male) 4.6
293915 Antisense, RP_040617_01_G02, Mouse strain C57BL/6J (56 days, male) 1.5

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