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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:257.7 nTPM
HPA Brain:104.8 nTPM
GTEx:257.7 nTPM
FANTOM5:195.9 Scaled Tags Per Million
Pig:34.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.9
1981 Female, age 72, midline 128.7
2194 Female, age 79, both hemispheres 87.4
2565 Male, age 75, midline 85.6
2816 Male, age 47, midline 80.1
2048 Male, age 55, midline 78.0
Cervical spinal cord, dorsal horn
nTPM: 102.0
2173 Female, age 72, unknown 143.3
2296 Male, age 66, both hemispheres 124.1
2069 Male, age 47, both hemispheres 99.0
1877 Male, age 55, unknown 90.6
2297 Male, age 75, both hemispheres 82.8
2721 Male, age 90, both hemispheres 72.0
Cervical spinal cord, ventral horn
nTPM: 104.8
2480 Male, age 75, both hemispheres 121.2
2809 Male, age 90, both hemispheres 109.8
2068 Male, age 55, unknown 105.3
2098 Female, age 72, unknown 105.2
2295 Male, age 66, both hemispheres 93.8
2820 Female, age 79, both hemispheres 93.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 257.7
Samples: 204

Max nTPM: 481.6
Min nTPM: 97.9
Std nTPM: 77.3
Median nTPM: 248.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 481.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 475.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 465.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 464.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 447.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 427.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 423.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 413.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 410.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 398.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 394.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 391.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 389.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 384.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 377.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 370.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 369.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 364.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 360.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 357.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 357.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 355.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 353.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 352.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 351.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 350.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 347.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 347.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 340.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 333.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 333.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 333.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 332.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 332.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 330.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 327.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 327.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 326.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 325.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 325.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 324.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 324.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 320.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 318.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 317.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 317.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 312.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 309.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 308.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 308.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 307.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 307.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 306.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 304.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 303.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 302.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 301.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 301.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 300.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 300.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 300.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 298.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 297.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 296.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 295.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 294.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 293.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 290.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 290.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 290.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 289.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 288.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 286.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 283.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 282.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 282.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 281.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 278.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 275.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 272.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 270.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 270.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 269.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 268.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 265.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 262.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 261.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 261.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 259.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 258.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 258.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 258.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 257.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 255.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 255.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 254.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 254.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 252.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 250.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 250.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 248.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 248.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 248.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 248.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 248.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 245.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 245.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 245.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 243.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 242.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 241.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 241.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 241.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 237.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 237.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 236.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 236.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 235.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 235.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 233.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 232.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 232.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 231.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 228.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 227.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 226.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 226.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 226.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 226.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 225.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 225.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 224.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 222.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 221.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 220.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 218.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 214.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 213.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 211.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 210.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 210.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 207.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 206.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 206.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 206.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 203.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 203.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 202.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 202.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 202.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 202.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 199.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 199.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 198.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 196.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 196.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 193.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 193.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 192.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 192.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 191.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 188.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 186.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 185.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 183.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 182.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 180.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 180.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 178.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 178.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 178.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 176.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 174.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 173.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 173.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 173.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 172.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 171.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 171.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 170.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 170.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 167.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 167.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 166.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 164.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 162.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 158.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 153.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 151.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 150.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 149.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 145.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 144.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 144.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 143.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 137.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 136.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 135.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 134.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 127.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 122.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 107.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 97.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 195.9
FF:10181-103D1 60 years, female 240.3
FF:10159-103A6 76 years, female 151.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 34.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 29.8
Sample A Female 34.1
Sample B Female 35.7
Sample C Male 39.7
Sample D Male 29.8
Ventral spinal cord
nTPM: 34.9
Samples: 4

Max nTPM: 38.9
Min nTPM: 31.6
Sample A Female 35.0
Sample B Female 33.9
Sample C Male 38.9
Sample D Male 31.6

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