A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.1
nTPM
Monaco:
82.8
nTPM
Schmiedel:
163.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
HPA sample
nTPM
Classical monocyte nTPM: 17.2
Samples: 6
Max nTPM: 19.7
Min nTPM: 13.7
P10809_1003
18.8
P10809_1020
15.3
P10809_1039
19.7
P10809_1058
19.4
P10809_1080
13.7
P10809_1107
16.4
Intermediate monocyte nTPM: 19.1
Samples: 6
Max nTPM: 45.4
Min nTPM: 10.3
P10809_1004
13.9
P10809_1023
12.9
P10809_1042
15.6
P10809_1061
45.4
P10809_1081
16.7
P10809_1108
10.3
Non-classical monocyte nTPM: 17.4
Samples: 5
Max nTPM: 27.7
Min nTPM: 10.4
P10809_1005
10.4
P10809_1053
13.5
P10809_1072
27.7
P10809_1082
18.1
P10809_1109
17.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.8
Monaco sample
nTPM
Classical monocyte nTPM: 82.9
Samples: 4
Max nTPM: 121.7
Min nTPM: 61.9
RHH5313_R3680
61.9
RHH5221_R3593
68.7
RHH5250_R3622
79.1
RHH5279_R3651
121.7
Intermediate monocyte nTPM: 63.8
Samples: 4
Max nTPM: 71.7
Min nTPM: 46.6
RHH5314_R3681
68.5
RHH5222_R3594
46.6
RHH5251_R3623
68.6
RHH5280_R3652
71.7
Non-classical monocyte nTPM: 77.9
Samples: 4
Max nTPM: 108.1
Min nTPM: 57.6
RHH5315_R3682
58.3
RHH5223_R3595
57.6
RHH5252_R3624
108.1
RHH5281_R3653
87.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.4
Schmiedel sample id
TPM
Classical monocyte TPM: 114.8
Samples: 91
Max TPM: 153.1
Min TPM: 86.5
MONOCYTES_1
153.1
MONOCYTES_2
145.6
MONOCYTES_3
143.4
MONOCYTES_4
137.4
MONOCYTES_5
136.5
MONOCYTES_6
135.9
MONOCYTES_7
135.8
MONOCYTES_8
133.2
MONOCYTES_9
132.1
MONOCYTES_10
130.9
MONOCYTES_11
128.4
MONOCYTES_12
128.3
MONOCYTES_13
127.9
MONOCYTES_14
127.8
MONOCYTES_15
127.6
MONOCYTES_16
127.5
MONOCYTES_17
127.5
MONOCYTES_18
127.5
MONOCYTES_19
127.3
MONOCYTES_20
127.2
MONOCYTES_21
126.7
MONOCYTES_22
126.7
MONOCYTES_23
126.1
MONOCYTES_24
125.6
MONOCYTES_25
125.1
MONOCYTES_26
124.1
MONOCYTES_27
122.6
MONOCYTES_28
122.4
MONOCYTES_29
122.0
MONOCYTES_30
121.8
MONOCYTES_31
121.2
MONOCYTES_32
120.9
MONOCYTES_33
120.3
MONOCYTES_34
119.7
MONOCYTES_35
119.7
MONOCYTES_36
118.0
MONOCYTES_37
117.9
MONOCYTES_38
117.7
MONOCYTES_39
117.7
MONOCYTES_40
117.6
MONOCYTES_41
116.5
MONOCYTES_42
116.3
MONOCYTES_43
115.9
MONOCYTES_44
115.7
MONOCYTES_45
115.6
MONOCYTES_46
115.5
MONOCYTES_47
115.0
MONOCYTES_48
114.6
MONOCYTES_49
114.6
MONOCYTES_50
114.5
MONOCYTES_51
113.1
MONOCYTES_52
112.9
MONOCYTES_53
112.6
MONOCYTES_54
109.2
MONOCYTES_55
109.1
MONOCYTES_56
108.3
MONOCYTES_57
107.9
MONOCYTES_58
107.9
MONOCYTES_59
107.7
MONOCYTES_60
107.3
MONOCYTES_61
107.0
MONOCYTES_62
106.8
MONOCYTES_63
106.5
MONOCYTES_64
105.9
MONOCYTES_65
105.6
MONOCYTES_66
105.4
MONOCYTES_67
105.1
MONOCYTES_68
104.7
MONOCYTES_69
102.9
MONOCYTES_70
102.7
MONOCYTES_71
102.5
MONOCYTES_72
102.5
MONOCYTES_73
102.4
MONOCYTES_74
102.1
MONOCYTES_75
101.6
MONOCYTES_76
101.0
MONOCYTES_77
100.7
MONOCYTES_78
100.7
MONOCYTES_79
99.6
MONOCYTES_80
99.6
MONOCYTES_81
98.5
MONOCYTES_82
98.1
MONOCYTES_83
96.6
MONOCYTES_84
96.2
MONOCYTES_85
95.8
MONOCYTES_86
95.7
MONOCYTES_87
93.3
MONOCYTES_88
92.8
MONOCYTES_89
91.4
MONOCYTES_90
90.2
MONOCYTES_91
86.5
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Non-classical monocyte TPM: 163.4
Samples: 90
Max TPM: 227.3
Min TPM: 107.2
M2_1
227.3
M2_2
217.5
M2_3
217.5
M2_4
211.7
M2_5
211.1
M2_6
204.2
M2_7
203.3
M2_8
200.7
M2_9
198.8
M2_10
198.3
M2_11
198.1
M2_12
197.9
M2_13
197.6
M2_14
196.8
M2_15
189.1
M2_16
186.2
M2_17
186.0
M2_18
183.2
M2_19
183.2
M2_20
182.9
M2_21
182.7
M2_22
181.7
M2_23
180.6
M2_24
180.2
M2_25
179.5
M2_26
179.0
M2_27
178.9
M2_28
178.5
M2_29
178.2
M2_30
176.9
M2_31
173.7
M2_32
172.8
M2_33
172.6
M2_34
172.2
M2_35
171.6
M2_36
170.2
M2_37
169.9
M2_38
169.6
M2_39
168.7
M2_40
166.2
M2_41
164.8
M2_42
163.6
M2_43
162.6
M2_44
162.5
M2_45
161.4
M2_46
160.4
M2_47
160.1
M2_48
159.9
M2_49
159.8
M2_50
159.0
M2_51
158.8
M2_52
157.4
M2_53
157.1
M2_54
156.8
M2_55
156.8
M2_56
155.2
M2_57
154.1
M2_58
153.0
M2_59
152.9
M2_60
151.0
M2_61
150.3
M2_62
149.9
M2_63
149.1
M2_64
148.4
M2_65
147.9
M2_66
145.6
M2_67
144.7
M2_68
143.3
M2_69
142.8
M2_70
140.4
M2_71
140.3
M2_72
139.9
M2_73
138.6
M2_74
138.5
M2_75
138.0
M2_76
137.9
M2_77
136.1
M2_78
135.5
M2_79
135.3
M2_80
134.2
M2_81
132.1
M2_82
129.8
M2_83
126.5
M2_84
123.8
M2_85
122.6
M2_86
120.9
M2_87
119.0
M2_88
117.8
M2_89
111.5
M2_90
107.2
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