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  • FKBP1B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:59.3 nTPM
HPA Brain:22.6 nTPM
GTEx:59.3 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:44.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.6
Sample id Sample description nTPM
Amygdala
nTPM: 14.4
2517 Female, age 94, left hemisphere 22.2
2514 Male, age 75, right hemisphere 14.6
2814 Male, age 76, right hemisphere 14.1
1987 Female, age 91, left hemisphere 13.6
2695 Female, age 67, right hemisphere 7.3
Basal amygdala
nTPM: 22.6
2685 Female, age 94, left hemisphere 27.2
2243 Female, age 91, right hemisphere 27.1
2110 Male, age 80, left hemisphere 24.6
2827 Female, age 67, right hemisphere 20.0
2609 Male, age 75, right hemisphere 19.7
1955 Male, age 76, both hemispheres 16.8
Central amygdala
nTPM: 17.3
2826 Female, age 94, left hemisphere 28.0
2239 Male, age 80, left hemisphere 19.6
2701 Female, age 91, right hemisphere 16.2
1905 Male, age 76, both hemispheres 11.7
2515 Male, age 75, right hemisphere 11.1
Corticomedial amygdala
nTPM: 21.3
2829 Male, age 80, left hemisphere 26.9
2429 Female, age 94, left hemisphere 25.9
2242 Female, age 91, right hemisphere 20.2
2535 Female, age 67, right hemisphere 20.2
2428 Male, age 75, right hemisphere 19.3
2240 Male, age 76, both hemispheres 15.1
Lateral amygdala
nTPM: 16.4
2534 Female, age 94, left hemisphere 31.7
2516 Male, age 75, right hemisphere 15.4
2830 Female, age 67, right hemisphere 14.7
1883 Male, age 76, both hemispheres 13.8
2255 Female, age 91, right hemisphere 12.5
2256 Male, age 80, left hemisphere 10.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 59.3
Samples: 181

Max nTPM: 221.1
Min nTPM: 19.6
Std nTPM: 28.3
Median nTPM: 53.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 221.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 171.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 157.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 152.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 122.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 120.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 118.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 109.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 107.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 105.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 103.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 101.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 98.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 95.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 93.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 90.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 89.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 88.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 85.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 84.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 84.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 83.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 82.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 82.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 81.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 81.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 81.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 80.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 80.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 78.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 76.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 76.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 74.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 74.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 74.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 73.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 72.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 71.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 71.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 71.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 71.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 71.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 69.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 69.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 69.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 69.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 69.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 69.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 69.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 68.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 67.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 67.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 66.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 66.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 66.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 65.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 65.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 65.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 65.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 64.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 62.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 61.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 60.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 60.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 60.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 60.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 58.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 58.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 57.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 56.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 56.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 55.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 54.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 53.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 53.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 53.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 53.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 53.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 52.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 51.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 51.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 51.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 51.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 50.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 50.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 50.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 49.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 49.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 49.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 49.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 47.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 46.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 46.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 45.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 45.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 45.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 44.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 44.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 44.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 44.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 44.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 43.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 43.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 43.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 42.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 42.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 41.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 41.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 41.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 40.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 40.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 40.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 40.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 39.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 39.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 38.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 38.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 38.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 38.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 37.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 37.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 37.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 37.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 37.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 36.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 35.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 35.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 34.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 34.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 34.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 34.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 33.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 33.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 33.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 33.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 33.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 31.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 31.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 30.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 30.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 29.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 29.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 28.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 28.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 28.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 28.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 27.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 27.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 26.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 26.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 25.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 24.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 24.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 24.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 24.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 21.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 19.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.8
FF:10151-102I7 76 years, female 52.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.6
Pig sample Sample description nTPM
Amygdala
nTPM: 45.6
Samples: 4

Max nTPM: 63.3
Min nTPM: 37.0
Sample A Female 63.3
Sample B Female 37.0
Sample C Male 43.2
Sample D Male 38.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 44.3
Samples: 4

Max nTPM: 47.8
Min nTPM: 41.3
Sample A Male 42.3
Sample B Male 45.6
Sample C Female 47.8
Sample D Female 41.3

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