A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
51.5
nTPM
Schmiedel:
18.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Memory B-cell nTPM: 8.8
Samples: 6
Max nTPM: 13.5
Min nTPM: 3.7
P10809_1017
5.8
P10809_1025
10.6
P10809_1044
13.5
P10809_1063
8.2
P10809_1092
10.8
P10809_1105
3.7
Naive B-cell nTPM: 11.6
Samples: 6
Max nTPM: 22.3
Min nTPM: 7.3
P10809_1011
7.3
P10809_1029
11.5
P10809_1048
22.3
P10809_1067
10.0
P10809_1091
8.6
P10809_1104
10.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 36.8
Samples: 4
Max nTPM: 53.2
Min nTPM: 25.0
RHH5310_R3677
42.4
RHH5218_R3590
53.2
RHH5247_R3619
26.8
RHH5276_R3648
25.0
Naive B-cell nTPM: 51.5
Samples: 4
Max nTPM: 61.2
Min nTPM: 45.3
RHH5308_R3675
61.2
RHH5216_R3588
45.3
RHH5245_R3617
47.1
RHH5274_R3646
52.3
Non-switched memory B-cell nTPM: 47.7
Samples: 4
Max nTPM: 55.0
Min nTPM: 42.6
RHH5309_R3676
55.0
RHH5217_R3589
48.9
RHH5246_R3618
44.3
RHH5275_R3647
42.6
Plasmablast nTPM: 43.9
Samples: 4
Max nTPM: 52.6
Min nTPM: 37.9
RHH5312_R3679
45.0
RHH5220_R3592
52.6
RHH5249_R3621
39.9
RHH5278_R3650
37.9
Switched memory B-cell nTPM: 32.8
Samples: 4
Max nTPM: 36.4
Min nTPM: 30.1
RHH5311_R3678
31.4
RHH5219_R3591
30.1
RHH5248_R3620
33.2
RHH5277_R3649
36.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.5
Schmiedel sample id
TPM
Naive B-cell TPM: 18.5
Samples: 91
Max TPM: 24.5
Min TPM: 11.4
B_CELL_NAIVE_1
24.5
B_CELL_NAIVE_2
24.3
B_CELL_NAIVE_3
23.6
B_CELL_NAIVE_4
23.0
B_CELL_NAIVE_5
22.4
B_CELL_NAIVE_6
22.1
B_CELL_NAIVE_7
21.7
B_CELL_NAIVE_8
21.7
B_CELL_NAIVE_9
21.6
B_CELL_NAIVE_10
21.5
B_CELL_NAIVE_11
21.4
B_CELL_NAIVE_12
21.3
B_CELL_NAIVE_13
21.1
B_CELL_NAIVE_14
21.0
B_CELL_NAIVE_15
21.0
B_CELL_NAIVE_16
20.9
B_CELL_NAIVE_17
20.9
B_CELL_NAIVE_18
20.8
B_CELL_NAIVE_19
20.5
B_CELL_NAIVE_20
20.4
B_CELL_NAIVE_21
20.4
B_CELL_NAIVE_22
20.4
B_CELL_NAIVE_23
20.4
B_CELL_NAIVE_24
20.1
B_CELL_NAIVE_25
20.1
B_CELL_NAIVE_26
20.1
B_CELL_NAIVE_27
19.7
B_CELL_NAIVE_28
19.6
B_CELL_NAIVE_29
19.6
B_CELL_NAIVE_30
19.6
B_CELL_NAIVE_31
19.4
B_CELL_NAIVE_32
19.4
B_CELL_NAIVE_33
19.2
B_CELL_NAIVE_34
19.1
B_CELL_NAIVE_35
19.1
B_CELL_NAIVE_36
19.1
B_CELL_NAIVE_37
19.0
B_CELL_NAIVE_38
19.0
B_CELL_NAIVE_39
18.9
B_CELL_NAIVE_40
18.8
B_CELL_NAIVE_41
18.5
B_CELL_NAIVE_42
18.5
B_CELL_NAIVE_43
18.3
B_CELL_NAIVE_44
18.2
B_CELL_NAIVE_45
18.2
B_CELL_NAIVE_46
18.1
B_CELL_NAIVE_47
18.0
B_CELL_NAIVE_48
18.0
B_CELL_NAIVE_49
18.0
B_CELL_NAIVE_50
17.9
B_CELL_NAIVE_51
17.8
B_CELL_NAIVE_52
17.7
B_CELL_NAIVE_53
17.5
B_CELL_NAIVE_54
17.5
B_CELL_NAIVE_55
17.5
B_CELL_NAIVE_56
17.4
B_CELL_NAIVE_57
17.4
B_CELL_NAIVE_58
17.3
B_CELL_NAIVE_59
17.2
B_CELL_NAIVE_60
17.2
B_CELL_NAIVE_61
17.2
B_CELL_NAIVE_62
17.2
B_CELL_NAIVE_63
17.1
B_CELL_NAIVE_64
17.0
B_CELL_NAIVE_65
17.0
B_CELL_NAIVE_66
17.0
B_CELL_NAIVE_67
17.0
B_CELL_NAIVE_68
16.9
B_CELL_NAIVE_69
16.8
B_CELL_NAIVE_70
16.8
B_CELL_NAIVE_71
16.8
B_CELL_NAIVE_72
16.7
B_CELL_NAIVE_73
16.6
B_CELL_NAIVE_74
16.6
B_CELL_NAIVE_75
16.5
B_CELL_NAIVE_76
16.5
B_CELL_NAIVE_77
16.4
B_CELL_NAIVE_78
16.3
B_CELL_NAIVE_79
16.3
B_CELL_NAIVE_80
16.2
B_CELL_NAIVE_81
16.1
B_CELL_NAIVE_82
16.0
B_CELL_NAIVE_83
15.9
B_CELL_NAIVE_84
15.8
B_CELL_NAIVE_85
15.3
B_CELL_NAIVE_86
15.2
B_CELL_NAIVE_87
14.9
B_CELL_NAIVE_88
14.7
B_CELL_NAIVE_89
14.6
B_CELL_NAIVE_90
14.5
B_CELL_NAIVE_91
11.4
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