A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.7
nTPM
Monaco:
37.8
nTPM
Schmiedel:
16.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
HPA sample
nTPM
Memory B-cell nTPM: 6.7
Samples: 6
Max nTPM: 10.0
Min nTPM: 2.1
P10809_1017
8.6
P10809_1025
10.0
P10809_1044
2.1
P10809_1063
6.5
P10809_1092
6.5
P10809_1105
6.6
Naive B-cell nTPM: 4.0
Samples: 6
Max nTPM: 6.2
Min nTPM: 1.5
P10809_1011
2.2
P10809_1029
3.9
P10809_1048
1.5
P10809_1067
4.1
P10809_1091
6.2
P10809_1104
5.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 33.5
Samples: 4
Max nTPM: 58.1
Min nTPM: 11.2
RHH5310_R3677
58.1
RHH5218_R3590
11.2
RHH5247_R3619
39.2
RHH5276_R3648
25.6
Naive B-cell nTPM: 22.5
Samples: 4
Max nTPM: 38.5
Min nTPM: 13.5
RHH5308_R3675
22.5
RHH5216_R3588
38.5
RHH5245_R3617
15.3
RHH5274_R3646
13.5
Non-switched memory B-cell nTPM: 37.8
Samples: 4
Max nTPM: 54.7
Min nTPM: 18.9
RHH5309_R3676
39.0
RHH5217_R3589
38.4
RHH5246_R3618
54.7
RHH5275_R3647
18.9
Plasmablast nTPM: 37.2
Samples: 4
Max nTPM: 53.2
Min nTPM: 28.0
RHH5312_R3679
37.5
RHH5220_R3592
30.0
RHH5249_R3621
53.2
RHH5278_R3650
28.0
Switched memory B-cell nTPM: 35.4
Samples: 4
Max nTPM: 50.4
Min nTPM: 21.0
RHH5311_R3678
50.4
RHH5219_R3591
34.6
RHH5248_R3620
35.7
RHH5277_R3649
21.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Schmiedel sample id
TPM
Naive B-cell TPM: 16.0
Samples: 91
Max TPM: 28.8
Min TPM: 7.7
B_CELL_NAIVE_1
28.8
B_CELL_NAIVE_2
27.3
B_CELL_NAIVE_3
25.2
B_CELL_NAIVE_4
22.3
B_CELL_NAIVE_5
22.2
B_CELL_NAIVE_6
21.8
B_CELL_NAIVE_7
21.6
B_CELL_NAIVE_8
21.0
B_CELL_NAIVE_9
20.8
B_CELL_NAIVE_10
20.8
B_CELL_NAIVE_11
20.7
B_CELL_NAIVE_12
20.6
B_CELL_NAIVE_13
20.5
B_CELL_NAIVE_14
20.1
B_CELL_NAIVE_15
19.9
B_CELL_NAIVE_16
19.8
B_CELL_NAIVE_17
19.6
B_CELL_NAIVE_18
19.5
B_CELL_NAIVE_19
19.2
B_CELL_NAIVE_20
18.9
B_CELL_NAIVE_21
18.6
B_CELL_NAIVE_22
18.3
B_CELL_NAIVE_23
18.3
B_CELL_NAIVE_24
18.3
B_CELL_NAIVE_25
18.2
B_CELL_NAIVE_26
17.8
B_CELL_NAIVE_27
17.7
B_CELL_NAIVE_28
17.6
B_CELL_NAIVE_29
17.4
B_CELL_NAIVE_30
17.3
B_CELL_NAIVE_31
17.3
B_CELL_NAIVE_32
17.3
B_CELL_NAIVE_33
17.3
B_CELL_NAIVE_34
17.1
B_CELL_NAIVE_35
17.0
B_CELL_NAIVE_36
17.0
B_CELL_NAIVE_37
16.9
B_CELL_NAIVE_38
16.9
B_CELL_NAIVE_39
16.9
B_CELL_NAIVE_40
16.5
B_CELL_NAIVE_41
16.3
B_CELL_NAIVE_42
16.1
B_CELL_NAIVE_43
16.0
B_CELL_NAIVE_44
16.0
B_CELL_NAIVE_45
15.9
B_CELL_NAIVE_46
15.8
B_CELL_NAIVE_47
15.7
B_CELL_NAIVE_48
15.7
B_CELL_NAIVE_49
15.6
B_CELL_NAIVE_50
15.6
B_CELL_NAIVE_51
15.1
B_CELL_NAIVE_52
15.1
B_CELL_NAIVE_53
15.0
B_CELL_NAIVE_54
15.0
B_CELL_NAIVE_55
14.9
B_CELL_NAIVE_56
14.9
B_CELL_NAIVE_57
14.6
B_CELL_NAIVE_58
14.4
B_CELL_NAIVE_59
14.4
B_CELL_NAIVE_60
14.3
B_CELL_NAIVE_61
14.2
B_CELL_NAIVE_62
14.2
B_CELL_NAIVE_63
13.9
B_CELL_NAIVE_64
13.9
B_CELL_NAIVE_65
13.8
B_CELL_NAIVE_66
13.8
B_CELL_NAIVE_67
13.7
B_CELL_NAIVE_68
13.7
B_CELL_NAIVE_69
13.5
B_CELL_NAIVE_70
13.5
B_CELL_NAIVE_71
13.4
B_CELL_NAIVE_72
13.2
B_CELL_NAIVE_73
13.0
B_CELL_NAIVE_74
12.9
B_CELL_NAIVE_75
12.9
B_CELL_NAIVE_76
12.4
B_CELL_NAIVE_77
11.9
B_CELL_NAIVE_78
11.8
B_CELL_NAIVE_79
11.8
B_CELL_NAIVE_80
11.7
B_CELL_NAIVE_81
11.6
B_CELL_NAIVE_82
11.2
B_CELL_NAIVE_83
11.2
B_CELL_NAIVE_84
10.3
B_CELL_NAIVE_85
9.9
B_CELL_NAIVE_86
9.8
B_CELL_NAIVE_87
9.1
B_CELL_NAIVE_88
9.0
B_CELL_NAIVE_89
8.5
B_CELL_NAIVE_90
8.2
B_CELL_NAIVE_91
7.7
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