A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.1
nTPM
Monaco:
97.7
nTPM
Schmiedel:
32.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.1
HPA sample
nTPM
Classical monocyte nTPM: 22.6
Samples: 6
Max nTPM: 31.5
Min nTPM: 11.5
P10809_1003
26.9
P10809_1020
31.5
P10809_1039
27.6
P10809_1058
11.5
P10809_1080
19.3
P10809_1107
18.9
Intermediate monocyte nTPM: 27.9
Samples: 6
Max nTPM: 37.8
Min nTPM: 21.3
P10809_1004
34.6
P10809_1023
37.8
P10809_1042
24.0
P10809_1061
23.1
P10809_1081
21.3
P10809_1108
26.6
Non-classical monocyte nTPM: 30.1
Samples: 5
Max nTPM: 43.6
Min nTPM: 15.5
P10809_1005
34.9
P10809_1053
43.6
P10809_1072
15.5
P10809_1082
24.1
P10809_1109
32.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.7
Monaco sample
nTPM
Classical monocyte nTPM: 78.1
Samples: 4
Max nTPM: 94.0
Min nTPM: 69.0
RHH5313_R3680
94.0
RHH5221_R3593
78.9
RHH5250_R3622
70.3
RHH5279_R3651
69.0
Intermediate monocyte nTPM: 73.3
Samples: 4
Max nTPM: 89.4
Min nTPM: 61.6
RHH5314_R3681
89.4
RHH5222_R3594
61.6
RHH5251_R3623
66.1
RHH5280_R3652
76.0
Non-classical monocyte nTPM: 97.7
Samples: 4
Max nTPM: 110.0
Min nTPM: 90.5
RHH5315_R3682
110.0
RHH5223_R3595
98.3
RHH5252_R3624
90.5
RHH5281_R3653
91.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.3
Schmiedel sample id
TPM
Classical monocyte TPM: 13.6
Samples: 91
Max TPM: 20.0
Min TPM: 8.4
MONOCYTES_1
20.0
MONOCYTES_2
19.1
MONOCYTES_3
18.3
MONOCYTES_4
18.0
MONOCYTES_5
18.0
MONOCYTES_6
17.5
MONOCYTES_7
17.2
MONOCYTES_8
17.2
MONOCYTES_9
16.6
MONOCYTES_10
16.5
MONOCYTES_11
16.2
MONOCYTES_12
16.2
MONOCYTES_13
16.2
MONOCYTES_14
16.1
MONOCYTES_15
16.1
MONOCYTES_16
16.0
MONOCYTES_17
15.8
MONOCYTES_18
15.8
MONOCYTES_19
15.7
MONOCYTES_20
15.6
MONOCYTES_21
15.5
MONOCYTES_22
15.4
MONOCYTES_23
15.4
MONOCYTES_24
15.3
MONOCYTES_25
15.2
MONOCYTES_26
15.0
MONOCYTES_27
15.0
MONOCYTES_28
14.9
MONOCYTES_29
14.9
MONOCYTES_30
14.7
MONOCYTES_31
14.6
MONOCYTES_32
14.6
MONOCYTES_33
14.5
MONOCYTES_34
14.5
MONOCYTES_35
14.4
MONOCYTES_36
14.3
MONOCYTES_37
14.3
MONOCYTES_38
14.3
MONOCYTES_39
14.1
MONOCYTES_40
14.1
MONOCYTES_41
14.1
MONOCYTES_42
14.0
MONOCYTES_43
13.8
MONOCYTES_44
13.6
MONOCYTES_45
13.5
MONOCYTES_46
13.5
MONOCYTES_47
13.4
MONOCYTES_48
13.3
MONOCYTES_49
13.2
MONOCYTES_50
13.2
MONOCYTES_51
13.0
MONOCYTES_52
13.0
MONOCYTES_53
12.9
MONOCYTES_54
12.7
MONOCYTES_55
12.7
MONOCYTES_56
12.6
MONOCYTES_57
12.6
MONOCYTES_58
12.6
MONOCYTES_59
12.5
MONOCYTES_60
12.5
MONOCYTES_61
12.5
MONOCYTES_62
12.4
MONOCYTES_63
12.4
MONOCYTES_64
12.3
MONOCYTES_65
12.3
MONOCYTES_66
12.1
MONOCYTES_67
12.1
MONOCYTES_68
12.1
MONOCYTES_69
12.0
MONOCYTES_70
12.0
MONOCYTES_71
12.0
MONOCYTES_72
11.7
MONOCYTES_73
11.6
MONOCYTES_74
11.6
MONOCYTES_75
11.6
MONOCYTES_76
11.5
MONOCYTES_77
11.2
MONOCYTES_78
11.1
MONOCYTES_79
11.0
MONOCYTES_80
10.9
MONOCYTES_81
10.9
MONOCYTES_82
10.8
MONOCYTES_83
10.4
MONOCYTES_84
10.4
MONOCYTES_85
10.2
MONOCYTES_86
10.0
MONOCYTES_87
9.6
MONOCYTES_88
8.8
MONOCYTES_89
8.8
MONOCYTES_90
8.6
MONOCYTES_91
8.4
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Non-classical monocyte TPM: 32.3
Samples: 90
Max TPM: 50.2
Min TPM: 21.1
M2_1
50.2
M2_2
47.2
M2_3
46.8
M2_4
45.6
M2_5
45.2
M2_6
42.2
M2_7
42.0
M2_8
41.9
M2_9
41.9
M2_10
41.4
M2_11
40.6
M2_12
37.6
M2_13
37.3
M2_14
37.0
M2_15
36.7
M2_16
36.3
M2_17
36.2
M2_18
36.1
M2_19
36.0
M2_20
35.5
M2_21
35.4
M2_22
35.4
M2_23
35.2
M2_24
34.4
M2_25
34.0
M2_26
33.8
M2_27
33.7
M2_28
33.5
M2_29
33.3
M2_30
33.2
M2_31
33.2
M2_32
33.0
M2_33
33.0
M2_34
32.9
M2_35
32.9
M2_36
32.8
M2_37
32.7
M2_38
32.7
M2_39
32.6
M2_40
32.6
M2_41
32.3
M2_42
32.3
M2_43
31.9
M2_44
31.6
M2_45
31.6
M2_46
31.6
M2_47
31.3
M2_48
31.1
M2_49
30.8
M2_50
30.7
M2_51
30.7
M2_52
30.6
M2_53
30.6
M2_54
30.4
M2_55
30.3
M2_56
30.3
M2_57
30.0
M2_58
29.8
M2_59
29.7
M2_60
29.7
M2_61
29.5
M2_62
29.5
M2_63
29.4
M2_64
29.4
M2_65
29.1
M2_66
29.1
M2_67
28.9
M2_68
28.3
M2_69
28.3
M2_70
28.3
M2_71
28.1
M2_72
28.1
M2_73
27.8
M2_74
27.7
M2_75
27.6
M2_76
27.5
M2_77
27.3
M2_78
27.2
M2_79
26.7
M2_80
26.2
M2_81
26.1
M2_82
26.0
M2_83
25.5
M2_84
25.4
M2_85
25.1
M2_86
24.8
M2_87
24.2
M2_88
22.5
M2_89
22.0
M2_90
21.1
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