MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2341.9 nTPM
HPA Brain:357.0 nTPM
GTEx:2341.9 nTPM
FANTOM5:24.3 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 357.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 290.5
2219 Male, age 76, both hemispheres 346.2
2666 Male, age 74, left hemisphere 344.4
1870 Female, age 42, unknown 317.1
2411 Female, age 72, unknown 301.1
2828 Female, age 72, unknown 299.1
1833 Male, age 53, unknown 290.6
2586 Male, age 75, left hemisphere 286.4
1830 Male, age 51, unknown 274.6
1827 Male, age 72, unknown 228.5
2019 Male, age 18, unknown 217.1
Dorsal raphe nucleus
nTPM: 267.9
2750 Male, age 76, both hemispheres 308.1
2016 Female, age 72, unknown 290.7
1828 Male, age 53, unknown 271.0
2298 Female, age 72, unknown 270.7
2047 Male, age 72, unknown 199.2
Inferior colliculus
nTPM: 290.6
2849 Male, age 72, unknown 357.9
1890 Male, age 53, unknown 301.6
1848 Female, age 42, unknown 254.6
2097 Female, age 72, unknown 248.5
Median raphe nucleus
nTPM: 305.3
2220 Male, age 76, midline 305.3
Periaquaductal grey, anterior
nTPM: 254.7
2502 Female, age 75, unknown 298.6
1795 Male, age 51, unknown 254.3
1947 Male, age 18, unknown 211.2
Periaquaductal grey, dorsal
nTPM: 298.1
2850 Male, age 76, both hemispheres 372.4
1840 Male, age 53, unknown 304.1
2464 Female, age 72, unknown 276.1
1831 Male, age 72, unknown 239.7
Periaquaductal grey, lateral
nTPM: 227.7
2053 Male, age 18, unknown 249.4
2140 Male, age 76, both hemispheres 249.3
2272 Male, age 74, both hemispheres 184.5
Pretectal area
nTPM: 252.9
2825 Male, age 18, unknown 305.0
2316 Male, age 76, right hemisphere 300.5
1815 Male, age 53, unknown 287.4
2224 Female, age 72, unknown 276.8
1817 Female, age 42, unknown 250.7
1816 Male, age 51, unknown 247.5
2007 Male, age 72, unknown 246.0
2667 Female, age 75, unknown 241.2
2407 Male, age 75, both hemispheres 239.5
1944 Female, age 72, unknown 198.1
2273 Male, age 74, both hemispheres 189.6
Red nucleus
nTPM: 314.7
2503 Female, age 72, unknown 411.6
2725 Female, age 75, unknown 347.9
1865 Male, age 51, unknown 338.0
2769 Male, age 72, unknown 325.6
1821 Female, age 72, unknown 320.0
2227 Male, age 72, unknown 316.7
1904 Male, age 53, unknown 310.8
2588 Male, age 74, left hemisphere 302.6
2823 Male, age 76, right hemisphere 298.5
2584 Male, age 75, left hemisphere 274.8
2785 Male, age 18, unknown 265.2
1954 Female, age 42, unknown 264.6
Substantia nigra
nTPM: 357.0
2699 Male, age 18, unknown 553.2
2241 Male, age 72, unknown 488.5
1851 Male, age 51, unknown 405.9
2665 Male, age 74, both hemispheres 393.7
2409 Female, age 72, unknown 384.2
1916 Female, age 42, unknown 358.9
1941 Male, age 53, unknown 258.4
2590 Female, age 75, unknown 252.6
1889 Female, age 72, unknown 246.9
2583 Male, age 75, right hemisphere 227.5
Superior colliculus
nTPM: 277.1
2587 Male, age 74, left hemisphere 331.2
1913 Female, age 42, unknown 316.9
1995 Male, age 72, unknown 305.6
2668 Female, age 75, unknown 292.7
1796 Male, age 53, unknown 286.6
2664 Male, age 75, both hemispheres 285.3
1839 Male, age 51, unknown 259.5
2087 Female, age 72, unknown 238.1
2261 Male, age 18, unknown 234.7
1895 Male, age 76, right hemisphere 220.7
Ventral tegmental area
nTPM: 320.5
2223 Female, age 72, unknown 376.8
1915 Female, age 42, unknown 355.8
2021 Male, age 53, unknown 316.0
2218 Male, age 76, both hemispheres 307.8
2410 Female, age 72, unknown 291.0
1942 Male, age 51, unknown 276.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2341.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2341.9
Samples: 183

Max nTPM: 6128.7
Min nTPM: 705.5
Std nTPM: 951.9
Median nTPM: 2141.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6128.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6052.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5968.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5424.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4431.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 4409.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4266.4
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 4116.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 4059.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 4026.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 3971.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

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