HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:51.3 nTPM
HPA Brain:21.9 nTPM
GTEx:51.3 nTPM
FANTOM5:68.8 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:25.1 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039791
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 21.9
Sample id Sample description nTPM
Hippocampus
nTPM: 21.9
2529 Female, age 94, left hemisphere 24.3
2148 Female, age 91, left hemisphere 22.8
1898 Male, age 80, left hemisphere 21.8
1911 Female, age 85, right hemisphere 21.3
2621 Female, age 67, right hemisphere 21.1
1855 Male, age 76, left hemisphere 20.3
Dentate gyrus
nTPM: 19.9
2246 Female, age 85, both hemispheres 23.9
2531 Female, age 67, both hemispheres 20.3
2530 Female, age 94, left hemisphere 19.9
2010 Male, age 76, both hemispheres 18.5
2528 Male, age 74, both hemispheres 18.3
1927 Female, age 91, both hemispheres 18.2
Entorhinal gyrus
nTPM: 18.4
2686 Male, age 75, right hemisphere 19.5
1938 Female, age 85, left hemisphere 19.2
2117 Female, age 91, right hemisphere 19.2
1787 Male, age 76, left hemisphere 18.4
2764 Male, age 80, right hemisphere 17.5
2613 Female, age 94, left hemisphere 16.9
Hippocampus, CA1
nTPM: 20.7
2527 Male, age 74, both hemispheres 23.3
2749 Male, age 80, left hemisphere 23.3
1873 Female, age 85, both hemispheres 22.8
2045 Male, age 76, both hemispheres 17.3
2082 Female, age 91, right hemisphere 16.8
Hippocampus, CA2
nTPM: 19.5
1892 Male, age 76, both hemispheres 23.2
2113 Female, age 91, right hemisphere 19.6
1940 Female, age 85, left hemisphere 19.4
2437 Female, age 94, left hemisphere 18.8
2249 Male, age 74, both hemispheres 18.5
1963 Male, age 80, left hemisphere 17.6
Hippocampus, CA3
nTPM: 20.0
2137 Male, age 80, left hemisphere 23.5
1891 Female, age 85, both hemispheres 20.0
1867 Male, age 76, both hemispheres 19.5
2861 Female, age 67, both hemispheres 19.3
2436 Male, age 74, both hemispheres 18.8
2620 Female, age 94, left hemisphere 18.7
Parahippocampal cortex
nTPM: 21.4
1850 Male, age 80, both hemispheres 26.0
2245 Female, age 91, both hemispheres 25.9
2532 Female, age 72, left hemisphere 22.8
2622 Female, age 67, right hemisphere 22.8
2692 Male, age 74, both hemispheres 22.2
1990 Female, age 91, right hemisphere 21.4
2018 Male, age 76, both hemispheres 20.9
1933 Female, age 85, both hemispheres 17.9
2693 Female, age 94, both hemispheres 17.8
2250 Female, age 67, right hemisphere 16.6
Perirhinal gyrus
nTPM: 21.9
1794 Male, age 80, right hemisphere 24.6
2521 Female, age 94, right hemisphere 23.7
1841 Female, age 85, right hemisphere 21.7
1847 Female, age 91, left hemisphere 19.8
2848 Male, age 76, right hemisphere 19.5
Subiculum
nTPM: 20.9
2438 Female, age 94, left hemisphere 24.8
1901 Male, age 80, both hemispheres 22.5
2042 Male, age 76, both hemispheres 21.1
1977 Female, age 85, both hemispheres 20.5
2619 Male, age 74, both hemispheres 20.2
2729 Female, age 91, right hemisphere 16.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 51.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.3
Samples: 255

Max nTPM: 97.8
Min nTPM: 26.6
Std nTPM: 11.4
Median nTPM: 49.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 97.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 88.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 88.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 87.7
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 82.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 78.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 78.8
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 77.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 77.4
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 75.3
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 74.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.8
FF:10169-103B7 60 years, female 73.7
FF:10153-102I9 76 years, female 64.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 10.6
Pig sample Sample description nTPM
Subiculum
nTPM: 9.8
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.2
Sample A Female 9.9
Sample B Female 10.5
Sample C Male 9.6
Sample D Male 9.2
Dorsal hippocampus
nTPM: 10.6
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.7
Sample A Female 11.6
Sample B Female 10.2
Sample C Male 10.7
Sample D Male 9.7
Entorhinal cortex
nTPM: 9.0
Samples: 4

Max nTPM: 9.1
Min nTPM: 8.7
Sample A Female 9.1
Sample B Female 8.7
Sample C Male 9.1
Sample D Male 8.9
Ventral hippocampus
nTPM: 10.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.7
Sample A Female 11.9
Sample B Female 10.3
Sample C Male 9.7
Sample D Male 10.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 25.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.1
Samples: 4

Max nTPM: 26.2
Min nTPM: 23.1
Sample A Male 25.7
Sample B Male 23.1
Sample C Female 26.2
Sample D Female 25.3
Hippocampal formation
nTPM: 22.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 19.4
Sample A Male 28.4
Sample B Male 21.1
Sample C Female 21.8
Sample D Female 19.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
70303815 Antisense, RP_050609_02_E12, Mouse strain C57BL/6J (56 days, male) 0.9

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