MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.4 nTPM
HPA Brain:24.6 nTPM
GTEx:55.4 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:21.1 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
1870 Female, age 42, unknown 23.8
2219 Male, age 76, both hemispheres 23.4
1833 Male, age 53, unknown 22.6
1830 Male, age 51, unknown 20.2
2666 Male, age 74, left hemisphere 20.0
2019 Male, age 18, unknown 19.7
2411 Female, age 72, unknown 19.6
1827 Male, age 72, unknown 18.3
2828 Female, age 72, unknown 17.4
2586 Male, age 75, left hemisphere 13.8
Dorsal raphe nucleus
nTPM: 18.5
2750 Male, age 76, both hemispheres 23.8
1828 Male, age 53, unknown 20.1
2016 Female, age 72, unknown 17.6
2047 Male, age 72, unknown 17.3
2298 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 19.4
2849 Male, age 72, unknown 22.4
1890 Male, age 53, unknown 20.0
1848 Female, age 42, unknown 19.0
2097 Female, age 72, unknown 16.1
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Periaquaductal grey, anterior
nTPM: 18.7
1947 Male, age 18, unknown 21.0
2502 Female, age 75, unknown 18.2
1795 Male, age 51, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 19.0
2850 Male, age 76, both hemispheres 21.7
2464 Female, age 72, unknown 19.7
1831 Male, age 72, unknown 19.0
1840 Male, age 53, unknown 15.6
Periaquaductal grey, lateral
nTPM: 18.3
2272 Male, age 74, both hemispheres 19.2
2140 Male, age 76, both hemispheres 18.3
2053 Male, age 18, unknown 17.3
Pretectal area
nTPM: 20.5
1817 Female, age 42, unknown 24.2
1944 Female, age 72, unknown 22.7
1815 Male, age 53, unknown 22.6
1816 Male, age 51, unknown 22.0
2667 Female, age 75, unknown 20.8
2407 Male, age 75, both hemispheres 20.0
2825 Male, age 18, unknown 19.9
2273 Male, age 74, both hemispheres 19.7
2224 Female, age 72, unknown 18.6
2316 Male, age 76, right hemisphere 18.0
2007 Male, age 72, unknown 17.1
Red nucleus
nTPM: 24.0
2725 Female, age 75, unknown 30.3
2503 Female, age 72, unknown 28.4
1865 Male, age 51, unknown 28.1
2823 Male, age 76, right hemisphere 27.2
1954 Female, age 42, unknown 25.6
1904 Male, age 53, unknown 23.7
1821 Female, age 72, unknown 22.7
2227 Male, age 72, unknown 22.4
2785 Male, age 18, unknown 22.3
2769 Male, age 72, unknown 20.3
2588 Male, age 74, left hemisphere 20.2
2584 Male, age 75, left hemisphere 16.2
Substantia nigra
nTPM: 24.6
2241 Male, age 72, unknown 35.9
2699 Male, age 18, unknown 27.8
1941 Male, age 53, unknown 26.7
1916 Female, age 42, unknown 25.3
1851 Male, age 51, unknown 25.1
2409 Female, age 72, unknown 24.0
1889 Female, age 72, unknown 22.3
2590 Female, age 75, unknown 20.5
2665 Male, age 74, both hemispheres 19.9
2583 Male, age 75, right hemisphere 17.9
Superior colliculus
nTPM: 20.3
1895 Male, age 76, right hemisphere 25.2
2587 Male, age 74, left hemisphere 24.6
1913 Female, age 42, unknown 22.0
2087 Female, age 72, unknown 19.9
1995 Male, age 72, unknown 19.2
1839 Male, age 51, unknown 19.1
1796 Male, age 53, unknown 18.9
2668 Female, age 75, unknown 18.4
2664 Male, age 75, both hemispheres 17.8
2261 Male, age 18, unknown 17.7
Ventral tegmental area
nTPM: 20.9
2218 Male, age 76, both hemispheres 26.1
2223 Female, age 72, unknown 25.6
1915 Female, age 42, unknown 21.7
2410 Female, age 72, unknown 18.3
1942 Male, age 51, unknown 17.4
2021 Male, age 53, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 55.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.4
Samples: 183

Max nTPM: 147.9
Min nTPM: 29.7
Std nTPM: 14.6
Median nTPM: 52.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 147.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 112.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 90.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 86.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 83.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 81.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 80.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.7
FF:10158-103A5 76 years, female 72.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 10.9
Sample C Male 11.6
Sample D Male 11.8
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 9.7
Sample A Female 14.4
Sample B Female 11.5
Sample C Male 9.7
Sample D Male 9.7
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 10.9
Min nTPM: 10.4
Sample B Female 10.4
Sample C Male 10.6
Sample D Male 10.9
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.6
Sample A Female 10.3
Sample B Female 9.6
Sample C Male 10.2
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.2
Min nTPM: 18.9
Sample A Male 23.2
Sample B Male 20.0
Sample C Female 22.5
Sample D Female 18.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70303815 Antisense, RP_050609_02_E12, Mouse strain C57BL/6J (56 days, male) 0.4

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