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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:914.7 nTPM
HPA Brain:301.2 nTPM
GTEx:914.7 nTPM
FANTOM5:208.1 Scaled Tags Per Million
Pig:67.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 242.6
1981 Female, age 72, midline 274.9
2565 Male, age 75, midline 266.7
2048 Male, age 55, midline 237.3
2194 Female, age 79, both hemispheres 228.5
2816 Male, age 47, midline 205.6
Cervical spinal cord, dorsal horn
nTPM: 228.9
2173 Female, age 72, unknown 284.1
2296 Male, age 66, both hemispheres 279.9
2069 Male, age 47, both hemispheres 261.1
1877 Male, age 55, unknown 237.7
2297 Male, age 75, both hemispheres 167.6
2721 Male, age 90, both hemispheres 143.1
Cervical spinal cord, ventral horn
nTPM: 301.2
2480 Male, age 75, both hemispheres 405.4
2809 Male, age 90, both hemispheres 368.3
2098 Female, age 72, unknown 332.9
2295 Male, age 66, both hemispheres 283.6
2068 Male, age 55, unknown 240.4
2820 Female, age 79, both hemispheres 176.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

914.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 914.7
Samples: 204

Max nTPM: 2363.0
Min nTPM: 391.9
Std nTPM: 332.4
Median nTPM: 847.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2363.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1884.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1776.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1774.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1755.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1739.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1660.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1605.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1550.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1532.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1517.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1510.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1501.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1496.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1492.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1486.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1482.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1430.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1422.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1399.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1385.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1343.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1314.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1295.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1291.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1290.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1290.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1290.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1285.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1284.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1280.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1274.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1265.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1246.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1238.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1227.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1217.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1215.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1203.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1195.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1188.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1177.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1171.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1130.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1127.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1120.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1118.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1117.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1106.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1105.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1104.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1098.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1097.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1095.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1093.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1086.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1083.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1081.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1072.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1049.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1046.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1044.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1043.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1034.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1019.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1004.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1004.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1003.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1002.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1000.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 999.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 998.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 978.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 970.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 955.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 951.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 949.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 938.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 936.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 935.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 933.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 928.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 924.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 920.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 919.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 915.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 902.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 900.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 897.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 892.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 886.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 885.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 883.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 878.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 872.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 871.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 870.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 861.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 857.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 854.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 852.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 850.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 844.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 837.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 835.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 820.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 817.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 814.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 810.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 808.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 805.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 800.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 799.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 795.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 795.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 795.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 794.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 791.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 790.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 789.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 789.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 787.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 783.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 776.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 775.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 773.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 771.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 766.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 758.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 758.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 757.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 753.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 750.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 749.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 739.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 735.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 733.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 723.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 720.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 719.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 718.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 717.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 716.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 715.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 715.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 707.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 704.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 703.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 688.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 686.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 686.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 679.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 675.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 673.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 667.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 659.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 657.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 656.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 647.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 640.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 637.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 633.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 632.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 631.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 625.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 624.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 622.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 618.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 618.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 618.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 601.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 589.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 585.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 581.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 577.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 571.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 570.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 565.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 563.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 554.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 552.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 551.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 544.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 540.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 538.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 535.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 534.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 533.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 520.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 502.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 494.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 488.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 485.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 485.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 483.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 477.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 474.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 472.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 461.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 447.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 444.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 415.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 405.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 391.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 208.1
FF:10181-103D1 60 years, female 225.4
FF:10159-103A6 76 years, female 190.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.9
Samples: 4

Max nTPM: 71.1
Min nTPM: 49.4
Sample A Female 63.1
Sample B Female 60.0
Sample C Male 71.1
Sample D Male 49.4
Ventral spinal cord
nTPM: 67.1
Samples: 4

Max nTPM: 76.0
Min nTPM: 57.0
Sample A Female 60.8
Sample B Female 74.7
Sample C Male 76.0
Sample D Male 57.0

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