BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:897.5 nTPM
HPA Brain:223.4 nTPM
GTEx:897.5 nTPM
FANTOM5:277.0 Scaled Tags Per Million
Macaque:161.2 nTPM
Mouse:188.7 nTPM
Rat:63.7 nTPM
Pig:73.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 223.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.3
2666 Male, age 74, left hemisphere 242.3
2411 Female, age 72, unknown 209.8
1870 Female, age 42, unknown 205.5
2828 Female, age 72, unknown 194.9
2019 Male, age 18, unknown 194.6
1827 Male, age 72, unknown 191.8
1833 Male, age 53, unknown 189.7
1830 Male, age 51, unknown 182.9
2586 Male, age 75, left hemisphere 174.7
2219 Male, age 76, both hemispheres 166.7
Dorsal raphe nucleus
nTPM: 196.0
2298 Female, age 72, unknown 218.9
1828 Male, age 53, unknown 202.6
2016 Female, age 72, unknown 193.9
2750 Male, age 76, both hemispheres 186.6
2047 Male, age 72, unknown 177.9
Inferior colliculus
nTPM: 190.8
2849 Male, age 72, unknown 198.5
1890 Male, age 53, unknown 193.9
2097 Female, age 72, unknown 192.2
1848 Female, age 42, unknown 178.6
Median raphe nucleus
nTPM: 193.9
2220 Male, age 76, midline 193.9
Periaquaductal grey, anterior
nTPM: 203.0
2502 Female, age 75, unknown 219.3
1947 Male, age 18, unknown 199.4
1795 Male, age 51, unknown 190.4
Periaquaductal grey, dorsal
nTPM: 199.8
1840 Male, age 53, unknown 233.3
2850 Male, age 76, both hemispheres 207.8
2464 Female, age 72, unknown 179.7
1831 Male, age 72, unknown 178.5
Periaquaductal grey, lateral
nTPM: 188.1
2140 Male, age 76, both hemispheres 203.0
2053 Male, age 18, unknown 185.5
2272 Male, age 74, both hemispheres 175.8
Pretectal area
nTPM: 190.5
1817 Female, age 42, unknown 207.4
2825 Male, age 18, unknown 204.6
1815 Male, age 53, unknown 198.7
2007 Male, age 72, unknown 197.2
1944 Female, age 72, unknown 196.7
2224 Female, age 72, unknown 195.5
1816 Male, age 51, unknown 189.7
2273 Male, age 74, both hemispheres 183.5
2316 Male, age 76, right hemisphere 181.7
2667 Female, age 75, unknown 171.6
2407 Male, age 75, both hemispheres 169.4
Red nucleus
nTPM: 217.1
2503 Female, age 72, unknown 269.4
2725 Female, age 75, unknown 254.5
1865 Male, age 51, unknown 233.3
2588 Male, age 74, left hemisphere 228.3
1821 Female, age 72, unknown 222.2
1904 Male, age 53, unknown 217.6
2227 Male, age 72, unknown 210.6
2769 Male, age 72, unknown 208.9
1954 Female, age 42, unknown 203.0
2584 Male, age 75, left hemisphere 195.2
2785 Male, age 18, unknown 194.9
2823 Male, age 76, right hemisphere 167.0
Substantia nigra
nTPM: 223.4
2409 Female, age 72, unknown 265.3
2241 Male, age 72, unknown 265.1
1851 Male, age 51, unknown 262.5
1916 Female, age 42, unknown 244.2
2665 Male, age 74, both hemispheres 236.6
2699 Male, age 18, unknown 233.3
1889 Female, age 72, unknown 196.1
2590 Female, age 75, unknown 188.9
1941 Male, age 53, unknown 180.7
2583 Male, age 75, right hemisphere 161.0
Superior colliculus
nTPM: 194.7
2587 Male, age 74, left hemisphere 254.1
1913 Female, age 42, unknown 207.0
2668 Female, age 75, unknown 195.7
1995 Male, age 72, unknown 194.6
2261 Male, age 18, unknown 192.9
1796 Male, age 53, unknown 191.1
2087 Female, age 72, unknown 183.0
1839 Male, age 51, unknown 182.5
1895 Male, age 76, right hemisphere 174.7
2664 Male, age 75, both hemispheres 171.1
Ventral tegmental area
nTPM: 208.8
1915 Female, age 42, unknown 239.5
2223 Female, age 72, unknown 226.8
2410 Female, age 72, unknown 206.0
2021 Male, age 53, unknown 201.2
1942 Male, age 51, unknown 193.7
2218 Male, age 76, both hemispheres 185.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 897.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 897.5
Samples: 183

Max nTPM: 2303.4
Min nTPM: 382.6
Std nTPM: 322.2
Median nTPM: 810.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2303.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2098.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1947.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1678.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1675.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1581.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1577.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1555.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1521.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1509.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1487.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 277.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 277.0
FF:10158-103A5 76 years, female 277.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 161.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 161.2
Samples: 1

Max nTPM: 161.2
Min nTPM: 161.2
Sample A 161.2
Midbrain
nTPM: 130.5
Samples: 1

Max nTPM: 130.5
Min nTPM: 130.5
Sample A 130.5
Superior colliculi
nTPM: 98.6
Samples: 1

Max nTPM: 98.6
Min nTPM: 98.6
Sample A 98.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.1
Samples: 3

Max nTPM: 94.3
Min nTPM: 58.8
Sample A Female 94.3
Sample B Female 58.8
Sample C Male 63.2
Midbrain
nTPM: 62.4
Samples: 3

Max nTPM: 64.3
Min nTPM: 58.8
Sample B Female 64.3
Sample C Male 64.1
Sample D Male 58.8
Periaqueductal gray
nTPM: 49.6
Samples: 3

Max nTPM: 52.9
Min nTPM: 43.8
Sample B Female 52.2
Sample C Male 52.9
Sample D Male 43.8
Superior colliculi
nTPM: 73.6
Samples: 4

Max nTPM: 86.2
Min nTPM: 56.6
Sample A Female 86.2
Sample B Female 70.2
Sample C Male 81.2
Sample D Male 56.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 188.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 188.7
Samples: 4

Max nTPM: 205.4
Min nTPM: 178.7
Sample A 205.4
Sample B 183.4
Sample C 178.7
Sample D 187.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 63.7
Rat sample Sample description nTPM
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 66.2
Min nTPM: 62.4
Sample A 62.8
Sample A 62.4
Sample A 63.5
Sample A 66.2

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