A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
11.9
nTPM
Schmiedel:
30.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.6
P10809_1003
0.8
P10809_1020
0.6
P10809_1039
0.7
P10809_1058
1.3
P10809_1080
0.8
P10809_1107
1.0
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.2
P10809_1004
0.9
P10809_1023
0.2
P10809_1042
0.6
P10809_1061
0.8
P10809_1081
1.1
P10809_1108
0.7
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.1
Min nTPM: 0.5
P10809_1005
0.8
P10809_1053
1.1
P10809_1072
0.5
P10809_1082
1.1
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
Monaco sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 4
Max nTPM: 16.6
Min nTPM: 4.8
RHH5313_R3680
9.7
RHH5221_R3593
4.8
RHH5250_R3622
16.6
RHH5279_R3651
9.1
Intermediate monocyte nTPM: 10.3
Samples: 4
Max nTPM: 13.7
Min nTPM: 8.1
RHH5314_R3681
9.1
RHH5222_R3594
8.1
RHH5251_R3623
13.7
RHH5280_R3652
10.2
Non-classical monocyte nTPM: 11.9
Samples: 4
Max nTPM: 14.9
Min nTPM: 9.1
RHH5315_R3682
9.1
RHH5223_R3595
10.8
RHH5252_R3624
12.8
RHH5281_R3653
14.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.9
Schmiedel sample id
TPM
Classical monocyte TPM: 15.3
Samples: 91
Max TPM: 19.9
Min TPM: 9.9
MONOCYTES_1
19.9
MONOCYTES_2
19.6
MONOCYTES_3
19.0
MONOCYTES_4
18.9
MONOCYTES_5
18.9
MONOCYTES_6
18.9
MONOCYTES_7
18.7
MONOCYTES_8
18.6
MONOCYTES_9
18.5
MONOCYTES_10
18.5
MONOCYTES_11
18.2
MONOCYTES_12
17.9
MONOCYTES_13
17.5
MONOCYTES_14
17.4
MONOCYTES_15
17.3
MONOCYTES_16
17.3
MONOCYTES_17
17.2
MONOCYTES_18
17.0
MONOCYTES_19
16.7
MONOCYTES_20
16.6
MONOCYTES_21
16.6
MONOCYTES_22
16.6
MONOCYTES_23
16.5
MONOCYTES_24
16.5
MONOCYTES_25
16.4
MONOCYTES_26
16.4
MONOCYTES_27
16.4
MONOCYTES_28
16.3
MONOCYTES_29
16.2
MONOCYTES_30
16.0
MONOCYTES_31
16.0
MONOCYTES_32
15.9
MONOCYTES_33
15.9
MONOCYTES_34
15.9
MONOCYTES_35
15.7
MONOCYTES_36
15.7
MONOCYTES_37
15.7
MONOCYTES_38
15.6
MONOCYTES_39
15.6
MONOCYTES_40
15.5
MONOCYTES_41
15.4
MONOCYTES_42
15.3
MONOCYTES_43
15.3
MONOCYTES_44
15.2
MONOCYTES_45
15.2
MONOCYTES_46
15.1
MONOCYTES_47
15.1
MONOCYTES_48
15.1
MONOCYTES_49
15.1
MONOCYTES_50
15.1
MONOCYTES_51
15.0
MONOCYTES_52
15.0
MONOCYTES_53
15.0
MONOCYTES_54
14.9
MONOCYTES_55
14.9
MONOCYTES_56
14.7
MONOCYTES_57
14.6
MONOCYTES_58
14.5
MONOCYTES_59
14.4
MONOCYTES_60
14.4
MONOCYTES_61
14.3
MONOCYTES_62
14.3
MONOCYTES_63
14.2
MONOCYTES_64
14.1
MONOCYTES_65
14.0
MONOCYTES_66
13.9
MONOCYTES_67
13.9
MONOCYTES_68
13.9
MONOCYTES_69
13.8
MONOCYTES_70
13.7
MONOCYTES_71
13.7
MONOCYTES_72
13.4
MONOCYTES_73
13.4
MONOCYTES_74
13.3
MONOCYTES_75
13.3
MONOCYTES_76
13.3
MONOCYTES_77
13.2
MONOCYTES_78
13.2
MONOCYTES_79
13.0
MONOCYTES_80
13.0
MONOCYTES_81
12.9
MONOCYTES_82
12.9
MONOCYTES_83
12.7
MONOCYTES_84
12.7
MONOCYTES_85
12.6
MONOCYTES_86
12.5
MONOCYTES_87
12.5
MONOCYTES_88
12.0
MONOCYTES_89
11.7
MONOCYTES_90
10.5
MONOCYTES_91
9.9
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Non-classical monocyte TPM: 30.9
Samples: 90
Max TPM: 41.8
Min TPM: 20.9
M2_1
41.8
M2_2
39.5
M2_3
38.4
M2_4
37.6
M2_5
37.2
M2_6
37.2
M2_7
37.1
M2_8
36.9
M2_9
36.8
M2_10
36.5
M2_11
36.5
M2_12
35.5
M2_13
35.2
M2_14
35.1
M2_15
35.1
M2_16
34.9
M2_17
34.7
M2_18
34.1
M2_19
34.1
M2_20
34.0
M2_21
33.9
M2_22
33.8
M2_23
33.7
M2_24
33.4
M2_25
33.2
M2_26
33.2
M2_27
33.1
M2_28
33.0
M2_29
32.7
M2_30
32.3
M2_31
32.3
M2_32
32.3
M2_33
32.3
M2_34
32.2
M2_35
32.2
M2_36
32.1
M2_37
31.8
M2_38
31.6
M2_39
31.5
M2_40
31.2
M2_41
31.1
M2_42
31.0
M2_43
30.8
M2_44
30.7
M2_45
30.7
M2_46
30.6
M2_47
30.5
M2_48
30.4
M2_49
30.3
M2_50
30.3
M2_51
30.2
M2_52
30.1
M2_53
30.0
M2_54
30.0
M2_55
29.9
M2_56
29.9
M2_57
29.7
M2_58
29.7
M2_59
29.5
M2_60
29.3
M2_61
29.1
M2_62
29.1
M2_63
28.8
M2_64
28.7
M2_65
28.7
M2_66
28.5
M2_67
28.3
M2_68
28.2
M2_69
28.1
M2_70
28.0
M2_71
28.0
M2_72
27.3
M2_73
27.2
M2_74
27.1
M2_75
26.9
M2_76
26.8
M2_77
26.6
M2_78
26.5
M2_79
26.1
M2_80
25.8
M2_81
25.5
M2_82
25.2
M2_83
24.8
M2_84
24.8
M2_85
24.4
M2_86
24.2
M2_87
23.7
M2_88
23.0
M2_89
21.8
M2_90
20.9
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