MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.1 nTPM
HPA Brain:156.1 nTPM
GTEx:44.1 nTPM
FANTOM5:3.2 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:109.0 nTPM
Allen mouse:15.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.1
2219 Male, age 76, both hemispheres 122.9
1827 Male, age 72, unknown 111.4
2828 Female, age 72, unknown 103.6
2666 Male, age 74, left hemisphere 98.1
2586 Male, age 75, left hemisphere 93.8
2019 Male, age 18, unknown 91.3
1870 Female, age 42, unknown 82.7
2411 Female, age 72, unknown 82.4
1833 Male, age 53, unknown 80.2
1830 Male, age 51, unknown 74.9
Dorsal raphe nucleus
nTPM: 85.1
2298 Female, age 72, unknown 101.3
2047 Male, age 72, unknown 90.9
1828 Male, age 53, unknown 88.0
2750 Male, age 76, both hemispheres 79.2
2016 Female, age 72, unknown 66.3
Inferior colliculus
nTPM: 106.3
2849 Male, age 72, unknown 118.3
2097 Female, age 72, unknown 110.1
1848 Female, age 42, unknown 104.7
1890 Male, age 53, unknown 92.0
Median raphe nucleus
nTPM: 110.6
2220 Male, age 76, midline 110.6
Periaquaductal grey, anterior
nTPM: 156.1
2502 Female, age 75, unknown 252.5
1795 Male, age 51, unknown 113.1
1947 Male, age 18, unknown 102.8
Periaquaductal grey, dorsal
nTPM: 89.6
1840 Male, age 53, unknown 108.2
2464 Female, age 72, unknown 96.5
2850 Male, age 76, both hemispheres 80.6
1831 Male, age 72, unknown 73.3
Periaquaductal grey, lateral
nTPM: 73.7
2140 Male, age 76, both hemispheres 88.0
2053 Male, age 18, unknown 80.4
2272 Male, age 74, both hemispheres 52.8
Pretectal area
nTPM: 106.8
1816 Male, age 51, unknown 158.4
2667 Female, age 75, unknown 132.0
2007 Male, age 72, unknown 131.2
1817 Female, age 42, unknown 130.1
1944 Female, age 72, unknown 124.5
2224 Female, age 72, unknown 95.3
2825 Male, age 18, unknown 94.5
1815 Male, age 53, unknown 93.6
2316 Male, age 76, right hemisphere 91.2
2407 Male, age 75, both hemispheres 74.1
2273 Male, age 74, both hemispheres 49.5
Red nucleus
nTPM: 67.1
2785 Male, age 18, unknown 91.0
2588 Male, age 74, left hemisphere 74.1
1821 Female, age 72, unknown 73.5
2769 Male, age 72, unknown 73.1
2227 Male, age 72, unknown 71.8
2584 Male, age 75, left hemisphere 71.0
2823 Male, age 76, right hemisphere 69.9
1954 Female, age 42, unknown 66.6
2503 Female, age 72, unknown 61.7
1865 Male, age 51, unknown 53.7
1904 Male, age 53, unknown 50.1
2725 Female, age 75, unknown 48.1
Substantia nigra
nTPM: 94.3
1941 Male, age 53, unknown 163.8
2665 Male, age 74, both hemispheres 146.8
1889 Female, age 72, unknown 120.0
1916 Female, age 42, unknown 103.4
1851 Male, age 51, unknown 93.2
2241 Male, age 72, unknown 80.6
2699 Male, age 18, unknown 78.4
2409 Female, age 72, unknown 68.7
2590 Female, age 75, unknown 53.5
2583 Male, age 75, right hemisphere 34.6
Superior colliculus
nTPM: 102.1
2664 Male, age 75, both hemispheres 135.0
1895 Male, age 76, right hemisphere 127.2
2087 Female, age 72, unknown 122.3
2261 Male, age 18, unknown 109.0
1796 Male, age 53, unknown 106.4
1839 Male, age 51, unknown 104.7
2668 Female, age 75, unknown 95.5
2587 Male, age 74, left hemisphere 93.2
1913 Female, age 42, unknown 70.4
1995 Male, age 72, unknown 57.3
Ventral tegmental area
nTPM: 94.3
2218 Male, age 76, both hemispheres 120.7
1942 Male, age 51, unknown 101.5
1915 Female, age 42, unknown 94.2
2223 Female, age 72, unknown 91.1
2410 Female, age 72, unknown 89.7
2021 Male, age 53, unknown 68.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.1
Samples: 183

Max nTPM: 283.7
Min nTPM: 0.8
Std nTPM: 44.2
Median nTPM: 33.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 283.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 259.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 225.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 183.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 159.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 156.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 131.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 127.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 121.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 114.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 113.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.2
FF:10158-103A5 76 years, female 3.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.3
Samples: 4

Max nTPM: 84.0
Min nTPM: 17.6
Sample A Female 72.7
Sample B Female 34.8
Sample C Male 84.0
Sample D Male 17.6
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 102.4
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 45.0
Sample C Male 102.4
Sample D Male 70.9
Periaqueductal gray
nTPM: 51.3
Samples: 3

Max nTPM: 65.9
Min nTPM: 41.4
Sample B Female 46.6
Sample C Male 65.9
Sample D Male 41.4
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 71.3
Min nTPM: 33.9
Sample A Female 58.9
Sample B Female 33.9
Sample C Male 71.3
Sample D Male 68.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 109.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.0
Samples: 4

Max nTPM: 114.0
Min nTPM: 105.3
Sample A Male 109.9
Sample B Male 105.3
Sample C Female 114.0
Sample D Female 106.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.1
74047926 Antisense, RP_051214_02_D11, Mouse strain C57BL/6J (56 days, male) 16.7
68196981 Antisense, RP_040928_01_B02, Mouse strain C57BL/6J (56 days, male) 13.4

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