A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.0
nTPM
Monaco:
17.0
nTPM
Schmiedel:
49.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.0
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 3.3
Min nTPM: 1.7
P10809_1003
1.7
P10809_1020
3.3
P10809_1039
2.2
P10809_1058
1.7
P10809_1080
2.0
P10809_1107
2.3
Intermediate monocyte nTPM: 3.0
Samples: 6
Max nTPM: 4.3
Min nTPM: 1.2
P10809_1004
1.2
P10809_1023
3.0
P10809_1042
4.3
P10809_1061
3.5
P10809_1081
1.9
P10809_1108
4.0
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 4.0
Min nTPM: 1.6
P10809_1005
4.0
P10809_1053
2.6
P10809_1072
1.8
P10809_1082
1.6
P10809_1109
2.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
Monaco sample
nTPM
Classical monocyte nTPM: 17.1
Samples: 4
Max nTPM: 24.1
Min nTPM: 7.2
RHH5313_R3680
17.8
RHH5221_R3593
7.2
RHH5250_R3622
19.1
RHH5279_R3651
24.1
Intermediate monocyte nTPM: 16.8
Samples: 4
Max nTPM: 26.2
Min nTPM: 8.2
RHH5314_R3681
26.2
RHH5222_R3594
8.2
RHH5251_R3623
14.6
RHH5280_R3652
18.1
Non-classical monocyte nTPM: 16.6
Samples: 4
Max nTPM: 27.8
Min nTPM: 8.2
RHH5315_R3682
17.4
RHH5223_R3595
8.2
RHH5252_R3624
13.0
RHH5281_R3653
27.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.0
Schmiedel sample id
TPM
Classical monocyte TPM: 31.7
Samples: 91
Max TPM: 43.2
Min TPM: 22.0
MONOCYTES_1
43.2
MONOCYTES_2
40.1
MONOCYTES_3
39.5
MONOCYTES_4
38.6
MONOCYTES_5
37.6
MONOCYTES_6
37.5
MONOCYTES_7
37.3
MONOCYTES_8
36.3
MONOCYTES_9
36.2
MONOCYTES_10
36.0
MONOCYTES_11
36.0
MONOCYTES_12
35.9
MONOCYTES_13
35.8
MONOCYTES_14
35.8
MONOCYTES_15
35.8
MONOCYTES_16
35.7
MONOCYTES_17
35.6
MONOCYTES_18
35.5
MONOCYTES_19
35.0
MONOCYTES_20
34.8
MONOCYTES_21
34.6
MONOCYTES_22
34.6
MONOCYTES_23
34.5
MONOCYTES_24
34.5
MONOCYTES_25
34.3
MONOCYTES_26
34.2
MONOCYTES_27
34.2
MONOCYTES_28
33.9
MONOCYTES_29
33.9
MONOCYTES_30
33.6
MONOCYTES_31
33.6
MONOCYTES_32
33.4
MONOCYTES_33
33.3
MONOCYTES_34
33.2
MONOCYTES_35
33.2
MONOCYTES_36
33.1
MONOCYTES_37
33.0
MONOCYTES_38
32.9
MONOCYTES_39
32.9
MONOCYTES_40
32.8
MONOCYTES_41
32.4
MONOCYTES_42
32.4
MONOCYTES_43
32.4
MONOCYTES_44
32.3
MONOCYTES_45
31.9
MONOCYTES_46
31.8
MONOCYTES_47
31.6
MONOCYTES_48
31.2
MONOCYTES_49
31.1
MONOCYTES_50
31.1
MONOCYTES_51
30.9
MONOCYTES_52
30.8
MONOCYTES_53
30.8
MONOCYTES_54
30.6
MONOCYTES_55
30.3
MONOCYTES_56
30.3
MONOCYTES_57
30.2
MONOCYTES_58
30.1
MONOCYTES_59
30.1
MONOCYTES_60
30.0
MONOCYTES_61
29.8
MONOCYTES_62
29.7
MONOCYTES_63
29.3
MONOCYTES_64
29.3
MONOCYTES_65
29.3
MONOCYTES_66
29.2
MONOCYTES_67
29.2
MONOCYTES_68
29.1
MONOCYTES_69
29.0
MONOCYTES_70
28.9
MONOCYTES_71
28.8
MONOCYTES_72
28.5
MONOCYTES_73
28.4
MONOCYTES_74
28.3
MONOCYTES_75
28.2
MONOCYTES_76
28.0
MONOCYTES_77
27.9
MONOCYTES_78
27.9
MONOCYTES_79
27.6
MONOCYTES_80
27.6
MONOCYTES_81
27.4
MONOCYTES_82
27.1
MONOCYTES_83
26.8
MONOCYTES_84
26.6
MONOCYTES_85
26.5
MONOCYTES_86
26.0
MONOCYTES_87
25.3
MONOCYTES_88
24.9
MONOCYTES_89
24.4
MONOCYTES_90
23.9
MONOCYTES_91
22.0
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Non-classical monocyte TPM: 49.0
Samples: 90
Max TPM: 71.6
Min TPM: 37.3
M2_1
71.6
M2_2
58.7
M2_3
58.4
M2_4
58.0
M2_5
57.8
M2_6
56.5
M2_7
56.2
M2_8
55.6
M2_9
55.5
M2_10
55.3
M2_11
55.2
M2_12
54.7
M2_13
54.4
M2_14
54.0
M2_15
53.4
M2_16
53.1
M2_17
52.9
M2_18
52.8
M2_19
52.7
M2_20
52.6
M2_21
52.5
M2_22
52.4
M2_23
52.2
M2_24
52.2
M2_25
51.5
M2_26
51.4
M2_27
51.3
M2_28
51.1
M2_29
50.9
M2_30
50.7
M2_31
50.1
M2_32
50.1
M2_33
50.1
M2_34
49.8
M2_35
49.6
M2_36
49.6
M2_37
49.2
M2_38
49.1
M2_39
48.8
M2_40
48.8
M2_41
48.7
M2_42
48.6
M2_43
48.6
M2_44
48.5
M2_45
48.4
M2_46
47.7
M2_47
47.7
M2_48
47.5
M2_49
47.5
M2_50
47.5
M2_51
47.4
M2_52
47.4
M2_53
47.3
M2_54
47.2
M2_55
47.1
M2_56
47.1
M2_57
47.0
M2_58
46.6
M2_59
46.5
M2_60
46.5
M2_61
46.5
M2_62
46.5
M2_63
46.4
M2_64
46.4
M2_65
46.2
M2_66
45.9
M2_67
45.9
M2_68
45.9
M2_69
45.7
M2_70
45.6
M2_71
45.4
M2_72
45.4
M2_73
45.4
M2_74
45.1
M2_75
44.7
M2_76
44.5
M2_77
44.5
M2_78
44.4
M2_79
44.3
M2_80
44.0
M2_81
43.9
M2_82
43.6
M2_83
43.2
M2_84
43.2
M2_85
43.2
M2_86
42.7
M2_87
41.5
M2_88
41.1
M2_89
40.2
M2_90
37.3
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