A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
91.9
nTPM
Monaco:
143.6
nTPM
Schmiedel:
20.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.9
HPA sample
nTPM
Classical monocyte nTPM: 91.9
Samples: 6
Max nTPM: 196.9
Min nTPM: 24.3
P10809_1003
24.3
P10809_1020
114.8
P10809_1039
137.8
P10809_1058
46.6
P10809_1080
31.1
P10809_1107
196.9
Intermediate monocyte nTPM: 64.1
Samples: 6
Max nTPM: 152.3
Min nTPM: 15.2
P10809_1004
15.2
P10809_1023
79.9
P10809_1042
67.7
P10809_1061
41.7
P10809_1081
28.0
P10809_1108
152.3
Non-classical monocyte nTPM: 60.9
Samples: 5
Max nTPM: 120.5
Min nTPM: 14.3
P10809_1005
14.3
P10809_1053
63.1
P10809_1072
90.9
P10809_1082
15.9
P10809_1109
120.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
143.6
Monaco sample
nTPM
Classical monocyte nTPM: 143.6
Samples: 4
Max nTPM: 206.1
Min nTPM: 80.7
RHH5313_R3680
80.7
RHH5221_R3593
124.4
RHH5250_R3622
163.3
RHH5279_R3651
206.1
Intermediate monocyte nTPM: 75.4
Samples: 4
Max nTPM: 117.3
Min nTPM: 56.4
RHH5314_R3681
67.0
RHH5222_R3594
60.7
RHH5251_R3623
56.4
RHH5280_R3652
117.3
Non-classical monocyte nTPM: 76.5
Samples: 4
Max nTPM: 117.0
Min nTPM: 50.1
RHH5315_R3682
50.1
RHH5223_R3595
65.2
RHH5252_R3624
73.8
RHH5281_R3653
117.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.5
Schmiedel sample id
TPM
Classical monocyte TPM: 20.5
Samples: 91
Max TPM: 29.2
Min TPM: 10.2
MONOCYTES_1
29.2
MONOCYTES_2
28.6
MONOCYTES_3
28.2
MONOCYTES_4
28.2
MONOCYTES_5
28.1
MONOCYTES_6
27.3
MONOCYTES_7
27.2
MONOCYTES_8
26.7
MONOCYTES_9
26.5
MONOCYTES_10
26.2
MONOCYTES_11
25.9
MONOCYTES_12
25.4
MONOCYTES_13
25.4
MONOCYTES_14
25.2
MONOCYTES_15
25.1
MONOCYTES_16
25.1
MONOCYTES_17
24.9
MONOCYTES_18
24.8
MONOCYTES_19
24.4
MONOCYTES_20
24.3
MONOCYTES_21
24.2
MONOCYTES_22
24.1
MONOCYTES_23
23.8
MONOCYTES_24
23.2
MONOCYTES_25
23.2
MONOCYTES_26
23.0
MONOCYTES_27
22.9
MONOCYTES_28
22.6
MONOCYTES_29
22.5
MONOCYTES_30
22.5
MONOCYTES_31
22.1
MONOCYTES_32
22.0
MONOCYTES_33
21.8
MONOCYTES_34
21.6
MONOCYTES_35
21.3
MONOCYTES_36
21.2
MONOCYTES_37
21.1
MONOCYTES_38
21.0
MONOCYTES_39
20.7
MONOCYTES_40
20.7
MONOCYTES_41
20.6
MONOCYTES_42
20.6
MONOCYTES_43
20.6
MONOCYTES_44
20.5
MONOCYTES_45
20.4
MONOCYTES_46
20.3
MONOCYTES_47
20.2
MONOCYTES_48
20.1
MONOCYTES_49
20.0
MONOCYTES_50
19.9
MONOCYTES_51
19.9
MONOCYTES_52
19.7
MONOCYTES_53
19.7
MONOCYTES_54
19.6
MONOCYTES_55
19.6
MONOCYTES_56
19.6
MONOCYTES_57
19.5
MONOCYTES_58
19.4
MONOCYTES_59
19.0
MONOCYTES_60
19.0
MONOCYTES_61
18.9
MONOCYTES_62
18.7
MONOCYTES_63
18.6
MONOCYTES_64
18.5
MONOCYTES_65
18.5
MONOCYTES_66
17.6
MONOCYTES_67
17.5
MONOCYTES_68
17.4
MONOCYTES_69
17.1
MONOCYTES_70
17.1
MONOCYTES_71
17.0
MONOCYTES_72
17.0
MONOCYTES_73
17.0
MONOCYTES_74
16.8
MONOCYTES_75
16.6
MONOCYTES_76
16.4
MONOCYTES_77
16.2
MONOCYTES_78
16.1
MONOCYTES_79
15.9
MONOCYTES_80
15.8
MONOCYTES_81
15.5
MONOCYTES_82
15.1
MONOCYTES_83
14.9
MONOCYTES_84
14.7
MONOCYTES_85
14.5
MONOCYTES_86
13.8
MONOCYTES_87
13.1
MONOCYTES_88
13.1
MONOCYTES_89
12.8
MONOCYTES_90
12.1
MONOCYTES_91
10.2
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Non-classical monocyte TPM: 12.1
Samples: 90
Max TPM: 17.8
Min TPM: 7.4
M2_1
17.8
M2_2
16.8
M2_3
16.5
M2_4
16.1
M2_5
15.7
M2_6
15.6
M2_7
15.6
M2_8
15.4
M2_9
15.3
M2_10
15.2
M2_11
15.2
M2_12
15.1
M2_13
14.9
M2_14
14.9
M2_15
14.8
M2_16
14.6
M2_17
14.5
M2_18
14.5
M2_19
14.4
M2_20
14.2
M2_21
14.2
M2_22
14.2
M2_23
13.8
M2_24
13.8
M2_25
13.8
M2_26
13.4
M2_27
13.4
M2_28
13.4
M2_29
13.3
M2_30
13.3
M2_31
13.2
M2_32
13.0
M2_33
13.0
M2_34
13.0
M2_35
13.0
M2_36
12.9
M2_37
12.9
M2_38
12.9
M2_39
12.6
M2_40
12.6
M2_41
12.6
M2_42
12.5
M2_43
12.4
M2_44
12.2
M2_45
12.0
M2_46
11.9
M2_47
11.8
M2_48
11.8
M2_49
11.8
M2_50
11.6
M2_51
11.5
M2_52
11.4
M2_53
11.4
M2_54
11.4
M2_55
11.4
M2_56
11.3
M2_57
11.2
M2_58
11.1
M2_59
11.0
M2_60
10.8
M2_61
10.7
M2_62
10.7
M2_63
10.6
M2_64
10.6
M2_65
10.5
M2_66
10.4
M2_67
10.3
M2_68
10.1
M2_69
10.1
M2_70
10.1
M2_71
9.9
M2_72
9.7
M2_73
9.6
M2_74
9.5
M2_75
9.3
M2_76
9.2
M2_77
9.1
M2_78
9.1
M2_79
9.0
M2_80
9.0
M2_81
9.0
M2_82
8.9
M2_83
8.7
M2_84
8.6
M2_85
8.4
M2_86
8.3
M2_87
7.9
M2_88
7.7
M2_89
7.6
M2_90
7.4
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