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  • CDKN1A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:49.5 nTPM
HPA Brain:42.6 nTPM
GTEx:49.5 nTPM
FANTOM5:252.4 Scaled Tags Per Million
Pig:25.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 23.2
1981 Female, age 72, midline 29.3
2194 Female, age 79, both hemispheres 23.3
2048 Male, age 55, midline 23.2
2565 Male, age 75, midline 21.9
2816 Male, age 47, midline 18.3
Cervical spinal cord, dorsal horn
nTPM: 31.1
2069 Male, age 47, both hemispheres 38.5
1877 Male, age 55, unknown 35.5
2721 Male, age 90, both hemispheres 34.5
2173 Female, age 72, unknown 34.2
2296 Male, age 66, both hemispheres 23.7
2297 Male, age 75, both hemispheres 20.1
Cervical spinal cord, ventral horn
nTPM: 42.6
2809 Male, age 90, both hemispheres 70.4
2098 Female, age 72, unknown 62.6
2295 Male, age 66, both hemispheres 42.7
2480 Male, age 75, both hemispheres 41.3
2820 Female, age 79, both hemispheres 22.4
2068 Male, age 55, unknown 16.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 49.5
Samples: 204

Max nTPM: 413.9
Min nTPM: 3.4
Std nTPM: 55.8
Median nTPM: 34.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 413.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 332.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 275.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 249.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 241.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 185.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 184.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 182.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 179.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 178.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 175.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 169.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 156.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 130.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 115.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 115.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 111.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 111.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 110.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 110.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 109.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 100.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 100.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 95.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 91.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 79.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 78.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 77.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 74.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 73.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 71.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 69.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 69.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 66.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 65.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 65.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 65.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 65.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 64.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 64.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 64.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 64.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 62.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 61.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 60.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 60.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 59.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 58.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 58.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 54.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 53.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 53.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 52.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 51.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 51.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 51.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 51.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 50.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 49.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 49.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 48.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 48.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 48.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 47.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 46.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 46.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 46.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 44.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 44.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 44.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 43.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 43.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 42.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 41.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 41.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 41.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 41.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 40.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 40.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 40.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 40.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 40.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 40.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 40.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 39.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 37.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 36.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 36.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 36.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 36.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 35.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 35.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 35.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 35.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 34.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 34.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 34.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 33.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 33.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 32.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 30.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 30.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 29.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 29.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 29.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 28.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 28.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 28.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 27.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 26.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 26.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 26.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 26.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 26.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 26.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 25.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 25.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 25.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 25.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 25.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 25.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 24.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 24.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 23.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 23.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 22.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 22.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 22.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 21.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 21.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 21.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 21.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 21.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 21.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 21.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 21.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 20.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 20.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 20.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 20.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 20.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 20.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 20.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 20.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 19.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 19.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 18.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 18.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 18.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 17.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 17.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 17.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 16.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 16.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 15.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 15.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 15.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 15.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 15.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 14.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 14.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 14.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 14.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 13.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 13.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 13.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 13.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 13.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 13.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 12.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 12.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 12.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 12.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 11.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 11.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 11.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 11.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 11.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 11.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 10.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 10.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 10.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 10.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 10.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 10.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 10.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 9.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 8.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 7.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 6.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 6.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 4.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 3.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 3.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 252.4
FF:10181-103D1 60 years, female 265.5
FF:10159-103A6 76 years, female 239.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 25.2
Samples: 4

Max nTPM: 49.4
Min nTPM: 9.4
Sample A Female 9.4
Sample B Female 22.7
Sample C Male 49.4
Sample D Male 19.1
Ventral spinal cord
nTPM: 25.2
Samples: 4

Max nTPM: 35.2
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 25.3
Sample C Male 35.2
Sample D Male 21.2

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