A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
27.5
nTPM
Schmiedel:
24.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 2.7
Samples: 6
Max nTPM: 5.4
Min nTPM: 1.7
P10809_1003
5.4
P10809_1020
1.7
P10809_1039
1.8
P10809_1058
2.6
P10809_1080
2.4
P10809_1107
2.4
Intermediate monocyte nTPM: 2.1
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.2
P10809_1004
2.9
P10809_1023
0.2
P10809_1042
1.8
P10809_1061
2.7
P10809_1081
2.8
P10809_1108
2.4
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 3.3
Min nTPM: 1.4
P10809_1005
2.9
P10809_1053
2.7
P10809_1072
3.3
P10809_1082
1.8
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.5
Monaco sample
nTPM
Classical monocyte nTPM: 27.4
Samples: 4
Max nTPM: 40.0
Min nTPM: 19.5
RHH5313_R3680
26.1
RHH5221_R3593
19.5
RHH5250_R3622
40.0
RHH5279_R3651
23.9
Intermediate monocyte nTPM: 27.6
Samples: 4
Max nTPM: 29.2
Min nTPM: 25.8
RHH5314_R3681
26.8
RHH5222_R3594
29.2
RHH5251_R3623
28.4
RHH5280_R3652
25.8
Non-classical monocyte nTPM: 20.0
Samples: 4
Max nTPM: 29.6
Min nTPM: 10.2
RHH5315_R3682
20.4
RHH5223_R3595
10.2
RHH5252_R3624
29.6
RHH5281_R3653
19.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.4
Schmiedel sample id
TPM
Classical monocyte TPM: 24.4
Samples: 91
Max TPM: 31.4
Min TPM: 18.2
MONOCYTES_1
31.4
MONOCYTES_2
31.4
MONOCYTES_3
29.4
MONOCYTES_4
29.3
MONOCYTES_5
28.7
MONOCYTES_6
28.6
MONOCYTES_7
28.2
MONOCYTES_8
28.1
MONOCYTES_9
27.9
MONOCYTES_10
27.7
MONOCYTES_11
27.5
MONOCYTES_12
27.2
MONOCYTES_13
26.7
MONOCYTES_14
26.6
MONOCYTES_15
26.6
MONOCYTES_16
26.5
MONOCYTES_17
26.5
MONOCYTES_18
26.5
MONOCYTES_19
26.4
MONOCYTES_20
26.4
MONOCYTES_21
26.3
MONOCYTES_22
26.3
MONOCYTES_23
26.2
MONOCYTES_24
26.0
MONOCYTES_25
26.0
MONOCYTES_26
25.7
MONOCYTES_27
25.5
MONOCYTES_28
25.3
MONOCYTES_29
25.2
MONOCYTES_30
25.2
MONOCYTES_31
24.9
MONOCYTES_32
24.9
MONOCYTES_33
24.9
MONOCYTES_34
24.8
MONOCYTES_35
24.8
MONOCYTES_36
24.8
MONOCYTES_37
24.7
MONOCYTES_38
24.6
MONOCYTES_39
24.6
MONOCYTES_40
24.5
MONOCYTES_41
24.5
MONOCYTES_42
24.4
MONOCYTES_43
24.2
MONOCYTES_44
24.2
MONOCYTES_45
24.1
MONOCYTES_46
24.1
MONOCYTES_47
24.1
MONOCYTES_48
24.0
MONOCYTES_49
24.0
MONOCYTES_50
24.0
MONOCYTES_51
24.0
MONOCYTES_52
24.0
MONOCYTES_53
23.9
MONOCYTES_54
23.9
MONOCYTES_55
23.8
MONOCYTES_56
23.8
MONOCYTES_57
23.8
MONOCYTES_58
23.6
MONOCYTES_59
23.6
MONOCYTES_60
23.5
MONOCYTES_61
23.5
MONOCYTES_62
23.5
MONOCYTES_63
23.4
MONOCYTES_64
23.2
MONOCYTES_65
23.1
MONOCYTES_66
23.0
MONOCYTES_67
23.0
MONOCYTES_68
22.9
MONOCYTES_69
22.9
MONOCYTES_70
22.7
MONOCYTES_71
22.5
MONOCYTES_72
22.4
MONOCYTES_73
22.4
MONOCYTES_74
22.4
MONOCYTES_75
22.2
MONOCYTES_76
22.1
MONOCYTES_77
21.9
MONOCYTES_78
21.7
MONOCYTES_79
21.7
MONOCYTES_80
21.5
MONOCYTES_81
21.4
MONOCYTES_82
21.4
MONOCYTES_83
21.3
MONOCYTES_84
21.1
MONOCYTES_85
21.0
MONOCYTES_86
20.9
MONOCYTES_87
20.8
MONOCYTES_88
20.6
MONOCYTES_89
19.4
MONOCYTES_90
19.0
MONOCYTES_91
18.2
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Non-classical monocyte TPM: 18.9
Samples: 90
Max TPM: 24.4
Min TPM: 13.5
M2_1
24.4
M2_2
24.1
M2_3
23.8
M2_4
23.8
M2_5
22.5
M2_6
22.3
M2_7
22.1
M2_8
22.1
M2_9
21.6
M2_10
21.5
M2_11
21.4
M2_12
21.4
M2_13
21.4
M2_14
21.3
M2_15
21.0
M2_16
20.9
M2_17
20.7
M2_18
20.6
M2_19
20.6
M2_20
20.5
M2_21
20.5
M2_22
20.5
M2_23
20.4
M2_24
20.3
M2_25
20.3
M2_26
20.2
M2_27
20.2
M2_28
20.2
M2_29
20.1
M2_30
20.1
M2_31
20.0
M2_32
19.8
M2_33
19.8
M2_34
19.7
M2_35
19.5
M2_36
19.4
M2_37
19.4
M2_38
19.4
M2_39
19.3
M2_40
19.3
M2_41
19.3
M2_42
19.3
M2_43
19.3
M2_44
19.1
M2_45
19.1
M2_46
18.9
M2_47
18.9
M2_48
18.9
M2_49
18.8
M2_50
18.5
M2_51
18.4
M2_52
18.4
M2_53
18.3
M2_54
18.3
M2_55
18.2
M2_56
18.1
M2_57
18.1
M2_58
18.0
M2_59
18.0
M2_60
17.9
M2_61
17.8
M2_62
17.7
M2_63
17.6
M2_64
17.5
M2_65
17.5
M2_66
17.5
M2_67
17.3
M2_68
17.3
M2_69
17.3
M2_70
17.2
M2_71
17.2
M2_72
17.1
M2_73
17.0
M2_74
16.9
M2_75
16.9
M2_76
16.8
M2_77
16.8
M2_78
16.6
M2_79
16.6
M2_80
16.6
M2_81
16.1
M2_82
16.0
M2_83
16.0
M2_84
15.9
M2_85
15.4
M2_86
15.2
M2_87
15.0
M2_88
15.0
M2_89
14.5
M2_90
13.5
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