A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
17.8
nTPM
Schmiedel:
48.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
Classical monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.2
P10809_1003
0.5
P10809_1020
0.3
P10809_1039
0.2
P10809_1058
0.3
P10809_1080
0.4
P10809_1107
0.3
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.7
P10809_1004
2.9
P10809_1023
1.2
P10809_1042
1.1
P10809_1061
1.3
P10809_1081
1.2
P10809_1108
0.7
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 5.4
Min nTPM: 0.5
P10809_1005
2.1
P10809_1053
0.5
P10809_1072
5.4
P10809_1082
1.3
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.8
Monaco sample
nTPM
Classical monocyte nTPM: 6.1
Samples: 4
Max nTPM: 6.9
Min nTPM: 5.2
RHH5313_R3680
6.0
RHH5221_R3593
6.9
RHH5250_R3622
6.3
RHH5279_R3651
5.2
Intermediate monocyte nTPM: 17.8
Samples: 4
Max nTPM: 27.1
Min nTPM: 13.0
RHH5314_R3681
13.0
RHH5222_R3594
17.8
RHH5251_R3623
27.1
RHH5280_R3652
13.2
Non-classical monocyte nTPM: 10.5
Samples: 4
Max nTPM: 12.8
Min nTPM: 7.1
RHH5315_R3682
10.6
RHH5223_R3595
11.3
RHH5252_R3624
12.8
RHH5281_R3653
7.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.0
Schmiedel sample id
TPM
Classical monocyte TPM: 17.1
Samples: 91
Max TPM: 28.3
Min TPM: 10.5
MONOCYTES_1
28.3
MONOCYTES_2
27.0
MONOCYTES_3
25.4
MONOCYTES_4
24.4
MONOCYTES_5
23.8
MONOCYTES_6
23.8
MONOCYTES_7
23.7
MONOCYTES_8
22.9
MONOCYTES_9
22.2
MONOCYTES_10
21.8
MONOCYTES_11
21.7
MONOCYTES_12
21.6
MONOCYTES_13
21.5
MONOCYTES_14
21.0
MONOCYTES_15
20.6
MONOCYTES_16
20.6
MONOCYTES_17
20.0
MONOCYTES_18
20.0
MONOCYTES_19
20.0
MONOCYTES_20
19.6
MONOCYTES_21
19.5
MONOCYTES_22
19.4
MONOCYTES_23
19.3
MONOCYTES_24
19.2
MONOCYTES_25
19.1
MONOCYTES_26
19.1
MONOCYTES_27
19.0
MONOCYTES_28
18.8
MONOCYTES_29
18.5
MONOCYTES_30
18.5
MONOCYTES_31
18.3
MONOCYTES_32
18.2
MONOCYTES_33
17.9
MONOCYTES_34
17.7
MONOCYTES_35
17.6
MONOCYTES_36
17.6
MONOCYTES_37
17.6
MONOCYTES_38
17.5
MONOCYTES_39
17.3
MONOCYTES_40
17.3
MONOCYTES_41
17.3
MONOCYTES_42
17.2
MONOCYTES_43
17.2
MONOCYTES_44
17.1
MONOCYTES_45
17.1
MONOCYTES_46
17.0
MONOCYTES_47
16.9
MONOCYTES_48
16.8
MONOCYTES_49
16.7
MONOCYTES_50
16.6
MONOCYTES_51
16.5
MONOCYTES_52
16.2
MONOCYTES_53
16.2
MONOCYTES_54
16.0
MONOCYTES_55
15.9
MONOCYTES_56
15.9
MONOCYTES_57
15.9
MONOCYTES_58
15.8
MONOCYTES_59
15.7
MONOCYTES_60
15.4
MONOCYTES_61
15.1
MONOCYTES_62
15.0
MONOCYTES_63
15.0
MONOCYTES_64
14.9
MONOCYTES_65
14.7
MONOCYTES_66
14.7
MONOCYTES_67
14.6
MONOCYTES_68
14.3
MONOCYTES_69
14.3
MONOCYTES_70
13.9
MONOCYTES_71
13.9
MONOCYTES_72
13.8
MONOCYTES_73
13.6
MONOCYTES_74
13.6
MONOCYTES_75
13.4
MONOCYTES_76
13.4
MONOCYTES_77
13.4
MONOCYTES_78
13.2
MONOCYTES_79
13.0
MONOCYTES_80
13.0
MONOCYTES_81
12.5
MONOCYTES_82
12.3
MONOCYTES_83
12.2
MONOCYTES_84
12.2
MONOCYTES_85
12.1
MONOCYTES_86
12.1
MONOCYTES_87
11.9
MONOCYTES_88
11.4
MONOCYTES_89
11.2
MONOCYTES_90
10.8
MONOCYTES_91
10.5
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Non-classical monocyte TPM: 48.0
Samples: 90
Max TPM: 92.4
Min TPM: 26.6
M2_1
92.4
M2_2
88.1
M2_3
81.1
M2_4
69.8
M2_5
69.6
M2_6
69.4
M2_7
69.3
M2_8
68.4
M2_9
66.1
M2_10
65.2
M2_11
61.8
M2_12
60.0
M2_13
59.9
M2_14
59.7
M2_15
58.2
M2_16
58.0
M2_17
57.7
M2_18
57.5
M2_19
57.2
M2_20
55.7
M2_21
54.9
M2_22
54.8
M2_23
54.4
M2_24
54.1
M2_25
54.0
M2_26
53.5
M2_27
53.5
M2_28
52.3
M2_29
52.1
M2_30
52.0
M2_31
51.2
M2_32
51.0
M2_33
50.7
M2_34
50.5
M2_35
50.4
M2_36
50.3
M2_37
48.6
M2_38
47.4
M2_39
47.3
M2_40
47.2
M2_41
46.3
M2_42
46.1
M2_43
46.1
M2_44
44.5
M2_45
44.1
M2_46
44.0
M2_47
44.0
M2_48
43.6
M2_49
43.5
M2_50
43.0
M2_51
42.9
M2_52
42.7
M2_53
42.6
M2_54
42.6
M2_55
42.5
M2_56
42.4
M2_57
42.2
M2_58
41.8
M2_59
41.3
M2_60
41.2
M2_61
40.9
M2_62
40.7
M2_63
40.3
M2_64
40.2
M2_65
40.2
M2_66
40.2
M2_67
40.0
M2_68
39.9
M2_69
39.7
M2_70
39.0
M2_71
38.9
M2_72
38.6
M2_73
38.5
M2_74
38.3
M2_75
37.9
M2_76
37.6
M2_77
37.1
M2_78
36.2
M2_79
36.2
M2_80
35.9
M2_81
35.4
M2_82
34.9
M2_83
34.2
M2_84
33.5
M2_85
33.2
M2_86
32.1
M2_87
31.5
M2_88
28.8
M2_89
27.7
M2_90
26.6
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